KEGG   Caenorhabditis briggsae (nematode): CBG_11394
Entry
CBG_11394         CDS       T01054                                 
Symbol
Cbr-rpb-9
Name
(RefSeq) Protein CBR-RPB-9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
cbr  Caenorhabditis briggsae (nematode)
Pathway
cbr03020  RNA polymerase
cbr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cbr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CBG_11394 (Cbr-rpb-9)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CBG_11394 (Cbr-rpb-9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cbr03021]
    CBG_11394 (Cbr-rpb-9)
   03400 DNA repair and recombination proteins [BR:cbr03400]
    CBG_11394 (Cbr-rpb-9)
Transcription machinery [BR:cbr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CBG_11394 (Cbr-rpb-9)
DNA repair and recombination proteins [BR:cbr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CBG_11394 (Cbr-rpb-9)
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Zn_ribbon_recom DZR Zn_Tnp_IS1595 DUF3716 RPA_interact_C CpXC zf-ACC
Other DBs
NCBI-GeneID: 8577156
NCBI-ProteinID: XP_002635161
UniProt: A8XD45
Position
V:complement(461557..462080)
AA seq 144 aa
MSQEYEDEDMYDPSAGLSPAPSDGDGKSGPGFVGIKFCPECNNMLYPREDKESRVLMYSC
RNCEHREVAANPCIYVNKLVHEIDELTQIVADIIHDPTLPKTEEHSCPKCTKRKAVFFQA
QTKKAEEEMRLYYVCMYCQFRWTE
NT seq 435 nt   +upstreamnt  +downstreamnt
atgagtcaagaatatgaggacgaggatatgtatgatccaagtgcgggtctctcgccggcg
ccaagcgacggcgatggaaagagcgggcctggattcgtcggaatcaaattctgtccagag
tgcaacaacatgctctatccacgcgaagacaaggaatctcgcgttttgatgtactcgtgc
cgaaactgtgaacatcgcgaagtcgctgcaaatccatgcatctacgtgaacaagctcgtt
catgagattgacgagttgacccaaatcgtcgccgacatcatccacgatccgacacttccc
aagactgaagagcactcgtgtccaaagtgcacgaagagaaaagcggtgttcttccaggcg
caaaccaagaaagctgaagaggagatgagactgtactacgtgtgcatgtactgtcagttc
agatggactgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system