KEGG T04825: A6J81

Citrobacter braakii: A6J81_05310

Entry

A6J81_05310       CDS       T04825

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

cbra Citrobacter braakii

Brite

KEGG Orthology (KO) [BR:cbra00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cbra03032]
    A6J81_05310 (topA)
   03400 DNA repair and recombination proteins [BR:cbra03400]
    A6J81_05310 (topA)
Enzymes [BR:cbra01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     A6J81_05310 (topA)
DNA replication proteins [BR:cbra03032]
Prokaryotic type
  DNA Topoisomerases
   A6J81_05310 (topA)
DNA repair and recombination proteins [BR:cbra03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      A6J81_05310 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Topo_Zn_Ribbon TOP1_ZnF Toprim zf-C4_Topoisom Zn_ribbon_recom Toprim_4 CK_II_beta DUF4795

Other DBs

NCBI-ProteinID:

ARC40190

Position

complement(1064656..1067253)

AA seq 865 aa
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSATKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDARYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEIDASTTTPGGDALPLQVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVREYIGDNFGKKYLPESANQYASKEN
SQEAHEAIRPSDVAVQAESLKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRILPAVDKGDTLTLIELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANHEAEWKGVLDNFFTDFTQQLDKAEKDPEEGGMRPNQMVLTSIVCP
TCGRKMGIRTASTGVFLGCSGYALSPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQTDPDGNKSMVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK

NT seq 2598 nt +upstreamnt +downstreamnt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgactacgtggtgaaatccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagcaactaaaaagagcgccgactcaacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgtatgggtgttgacccgtggcacaactgggac
gcgcgctatgaagtgctgcccggtaaagaaaaagttgtttctgaactgaagcaactggct
gaaaaagcagaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcg
tggcacctgcgggaagtgatcggcggcgatgacacccgttacagccgcgtggtgtttaac
gaaattaccaaaaacgctattcgtcaggcgtttgaaaaaccgggcgaactgaatatcgac
cgtgtgaatgcgcaacaggcgcgccgctttatggaccgtgttgtgggctatatggtgtcg
ccgttgctgtggaaaaaaattgcgcgcggtctttccgctggccgcgtacagtcggttgct
gtgcgtctggtggttgagcgtgaacgcgaaatcaaagcattcgttccagaagagttctgg
gagattgatgccagcacgactacgccaggcggcgacgcgttaccgcttcaggtaacgcat
cagaatgacaaaccgttccgcccggtcaaccgggaacaaacgcttgccgccgttagcttg
ttggaaaaagcgcgctacagcgtcctggaacgtgaagataagccgaccagcagcaagccg
ggcgcgccgttcatcacctccacgctacagcaggctgccagcacgcgtctgggcttcggc
gtgaagaaaactatgatgatggcgcagcgcttgtatgaagcgggctacatcacgtatatg
cgtactgactcaaccaacctgagtcaggatgcggtgaacatggttcgcgagtacatcggc
gataattttggcaaaaagtatctgccggagagcgcgaaccagtacgccagcaaagagaat
tcgcaggaagcgcacgaagctatccgtccttctgatgtcgccgtacaggcggaatcgctg
aaagatatggaagccgatgcgcagaaactgtatcagctgatctggcgccagtttgttgcc
tgtcagatgacgccagccaaatatgactccaccacgctgaccgtgggcgcgggtgatttc
cgtctgaaggcgcgtggccgtattctgcgcttcgatggctggaccaaagtaatgcctgcg
ctgcgtaagggcgatgaagatcgcattttaccggcggtagataaaggcgatacgttgacg
cttatcgaactgacgccagcgcaacactttaccaaaccgcctgcgcgcttcagcgaagct
tcgctggttaaagagctggaaaaacgtggcattggtcgcccatccacgtatgcgtcgatc
atctctacgattcaggatcgcggttatgttcgcgttgagaaccgtcgtttctatgctgaa
aaaatgggtgaaatcgtcaccgatcgtctggaagaaaacttccgcgaactgatgaactat
gattttaccgcgcagatggaagacagtctcgaccaggtggcaaatcacgaagccgaatgg
aagggcgtactcgacaacttcttcactgattttactcagcaactggataaagccgagaaa
gaccctgaagaaggcggtatgcgtccgaaccagatggtgctgaccagtattgtttgccca
acctgcggacgcaagatgggtattcgtaccgccagtaccggcgttttccttggttgttcc
ggctacgcgctttccccaaaagagcgttgcaaaaccaccattaacctggtgccggaaaac
gaagtgctgaacgtgctggaaggcgacgatgcggaaacgaacgcgctgcgcgccaaacga
cgctgccagaagtgcggcacggcgatggacagctaccttatcgatcctaagcgcaagctg
catgtatgtggtaataaccctacctgcgacggctatgagatcgaagagggtgaattccgt
atcaagggttatgacggtcctatcgttgagtgcgagaaatgtggctctgaaatgcacctg
aaaatgggacgtttcggtaagtacatggcgtgtaccaacgacgagtgcaaaaatacccgt
aagatcctgcgtaacggtgaagtcgctccgccgaaagaggatccggttccgttgccagaa
ctgccgtgtgaaaaatctgacgcgtatttcgtgttacgtgatggtgctgcgggtatcttc
ctggcggcaaatacgttcccgaaatcacgtgagacccgtgcgccgttagtggaagagttg
taccgtttccgcgatcgtctgccggaaaaactgcgctatctggcagatgcgccgcagacc
gatccggacggcaacaagtccatggttcgtttcagccgtaaaactaagcagcaatatgtt
gccgctgagaaagacggtaaggctaccggctggtccgcgttcttcgttgatggcaaatgg
gtagaaggaaagaaataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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