KEGG   Castor canadensis (American beaver): 109687309
Entry
109687309         CDS       T04791                                 
Symbol
Ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
ccan  Castor canadensis (American beaver)
Pathway
ccan03420  Nucleotide excision repair
ccan04120  Ubiquitin mediated proteolysis
ccan05161  Hepatitis B
ccan05170  Human immunodeficiency virus 1 infection
ccan05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ccan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    109687309 (Ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    109687309 (Ddb1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    109687309 (Ddb1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    109687309 (Ddb1)
   05161 Hepatitis B
    109687309 (Ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ccan04121]
    109687309 (Ddb1)
   03400 DNA repair and recombination proteins [BR:ccan03400]
    109687309 (Ddb1)
Ubiquitin system [BR:ccan04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     109687309 (Ddb1)
DNA repair and recombination proteins [BR:ccan03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      109687309 (Ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      109687309 (Ddb1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 109687309
NCBI-ProteinID: XP_020020764
UniProt: A0A250Y6X8
Position
Unknown
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcacagaagcccaccgccgtgaacggctgtgtgact
ggacactttacttcagcagaagacttgaacctgttgattgccaaaaacacaagattagag
atctatgtggtcactgcggaggggcttcggccagtcaaagaggtgggcatgtacgggaag
attgctgtcatggagcttttcaggcccaagggggagagcaaggacttgctgtttatcttg
acagctaaatacaatgcctgcatcctggagtataagcagagtggcgagagcattgatatc
attacacgagcccatggcaacgtccaggaccgcattggccgcccctcagagactggcatc
attggcatcatcgaccccgagtgccgcatgattggcctgcggctctatgatggccttttc
aaggttattcctctagaccgcgacaacaaagagctcaaggcctttaacatccgcctggag
gagctgcatgtcatcgatgtcaaattcctgtacggttgtcaagcacctaccatttgtttt
gtctaccaggaccctcaggggcggcatgtaaaaacctatgaggtatctctccgagagaaa
gaattcaataagggcccatggaaacaggaaaatgtagaagctgaagcatccatggtgatt
gcagtcccagagccctttggaggggccatcattattgggcaggaatcgatcacctatcac
aatggtgataaatacttggcaattgcccctcctatcatcaagcaaagcacaattgtgtgc
cacaatcgggtggaccctaacggttcacgataccttctgggagacatggaaggacggctc
ttcatgctgcttttggagaaggaggaacaaatggatggcactgtcaccctcaaggatctc
cgtgtggaactcttgggagagacctcaattgccgagtgcctgacgtaccttgataatggt
gttgtgtttgttgggtctcgcctaggtgactcccagcttgtgaagctcaacgttgacagc
aatgaacaaggctcctatgtagtggccatggaaacatttaccaatttaggacccattgtg
gatatgtgtgtagtggacctggagaggcaggggcaggggcagctggtcacttgctctggg
gctttcaaggaaggttccttgaggatcatccggaatggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggcttatggccgctgcggtctgaccccagccgtgag
actgatgacactttggtgctttcttttgtgggacagacaagagttctcatgctaaatgga
gaggaagtggaagaaactgaactgatggggtttgtggatgatcagcagacattcttctgt
ggcaatgtggctcatcagcaacttatacagatcacgtcagcatctgtgaggttggtctct
caagagcccaaagccctcgtcagtgagtggaaggagcctcaaggcaaaaacatcagtgtg
gcctcctgcaacagcagccaggtagttgtcgctgtgggaagggccctttattacctgcag
atccatccgcaggagctccggcagatcagccacacagagatggaacatgaagtggcctgc
ttggacatcacaccactgggggacagcaatgggctgtctccactttgtgccattggcctc
tggacagacatctcagcccgtatcttaaagctgccatcttttgaactactgcacaaggag
atgctcggtggagagattattcctcgctccatcctgatgaccacttttgagagtagccac
tacctcctttgtgcgttgggagatggagcccttttctactttgggctcaacattgaaaca
ggtttgttgagtgaccgtaagaaggtgactctgggcacccaacccacagtattgaggact
ttccgttctctttctaccaccaatgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaagttggtcttctccaatgttaatctcaaggaggtgaactatatgtgt
cccctcaactcagatggctatcctgacagcctggcactggcaaacaacagtaccctcacc
attggcaccattgatgagatccagaaactgcacattcgcacggttcccctctatgaatct
cccaggaagatttgttatcaggaagtgtcccagtgctttggggttctctccagccgcatt
gaagtccaagacacaagtggaggtacaactgctctgagacccagtgccagcacccaggcc
ctgtctagcagcgtcagctccagcaagctgttctccagcagcactgctccccacgagacc
tccttcggtgaagaggtggaagtgcacaacctcctcatcatcgatcagcacaccttcgaa
gtgcttcatgcccatcagtttctacagaatgagtatgccctcagcctggtctcctgcaag
ttgggcaaagaccccaatacatacttcattgtgggtacagctatggtatatcccgaagag
gcagagcccaagcagggtcgcatcgtggtcttccagtattcggatggaaaactacagact
gtggctgaaaaggaagtgaagggggctgtgtactctatggtggaatttaatgggaagctg
cttgccagcatcaacagcacggtgcggctctatgagtggaccacagaaaaggagctccgt
accgagtgcaatcactacaacaacatcatggccctctacttgaagactaagggtgacttc
atcctggtgggcgatcttatgcgctcagtgttgctacttgcctacaagcccatggaggga
aactttgaagagattgcccgagacttcaatcccaactggatgagtgcagtggaaatcttg
gatgatgacaatttcttgggagctgaaaatgcctttaacttgtttgtgtgtcagaaggac
agcgctgccaccactgacgaagagcggcagcacttgcaggaggttggtctcttccacctg
ggcgagtttgtcaatgtcttctgccatggctctctggttatgcagaatttgggcgagact
tccacccccactcagggctccgtgctctttggcacagtcaatggcatgattgggctggtg
acctcactatcagagagctggtacaacctcttgttggatatgcagaaccgactcaataaa
gtcatcaaaagtgtgggcaaaattgagcactccttctggagatcctttcacactgagcga
aagacagagccagccacgggcttcatcgatggagacctcattgagagtttcctggatatc
agccgccccaagatgcaggaggtcgtggcaaacctacagtatgacgatggcagcggtatg
aagcgagaagccaccgcagatgacctcattaaagttgtggaggagctgacccggatccat
tag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (26)   

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