KEGG   Cyprinus carpio (common carp): 109109093
Entry
109109093         CDS       T05134                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC2-like
  KO
K03021  DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Organism
ccar  Cyprinus carpio (common carp)
Pathway
ccar03020  RNA polymerase
ccar04623  Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:ccar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109109093
 09150 Organismal Systems
  09151 Immune system
   04623 Cytosolic DNA-sensing pathway
    109109093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccar03021]
    109109093
Enzymes [BR:ccar01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109109093
Transcription machinery [BR:ccar03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     109109093
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 109109093
NCBI-ProteinID: XP_018977758
Position
35:17476203..17502741
AA seq 1130 aa
MLQEEFGEMTPQQLAAPVDTVEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKAN
EKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRG
SQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQE
QLSKNRIIVEQDRKGAVGASVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIFKA
MGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQTQALKYIGNKVRRQRMWGGPKK
TKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDRDYYGNKRLE
LAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGN
WSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLSPPSGAMLCPSD
TPEGEACGLVKNLALMTHITTDMEDGPIVKLAFNLGVEDVNLLCGEELSYPTVFLVFLNG
NILGVIREHQKLVYTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKNGQ
PTVKNKHIEELSQGYRTFEDFLHESLVEYLDVNEENDCNIALYEHMISKDTTHLEIEPFT
LLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTK
TIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYT
NQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGERVENKQVLVNKSMPTITQTPLEGS
AQPGQPQYRDVPVTYKGATDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQ
KGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYGTA
FGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGIPLEAYIYFGPVYYQKLKHMVLDKMHAR
ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCDQC
GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLARYNE
NT seq 3393 nt   +upstreamnt  +downstreamnt
atgctgcaggaggagtttggggaaatgactccccagcagctcgctgctcccgtcgacact
gtggaggaaaagtggaagctgcttccagcctttttgaaggttaaaggcttagttaagcag
cacatcgattccttcaattacttcatcaatgttgagataaaaaagatcatgaaggcaaac
gagaagatcacaagtgatgctgacccaatgtggtatttgaaatatctcaatatctatgtt
ggcatgcctgatgtagaagaaagctttaatgtaaccagaccagtgtcaccacatgagtgt
cgtctgagagatatgacctattcagcccccatcactgtggacatagagtacacccgaggc
agccagagaattattcgcaatgctctcccaatcggaaggatgccaataatgctgcgaagc
tccaactgtgtattaacaggaaagacgccgatggagttctccaagcttaatgaatgtcct
ctggatccaggtggttatttcattgtgaaagggcaagaaaaggtcattctcattcaggaa
cagttatccaagaaccgcatcatcgtggagcaagatcgcaaaggtgctgtgggagcctcg
gtcaccagctctactcatgagaaaaagagcagaaccaacatgattgtgaaacagggacgc
ttttacctgaagcacaacaccctctctgaagatgcaccgattgctattatctttaaggcc
atgggagtggagagcgatcaggagatagttcagatgattggcacggaggaacatgtcatg
gctgcattcggtcccagtttggaggaatgtcagaaggcccaaatattcacccaaactcag
gcactaaaatacattggtaataaagtgaggcgtcagcgcatgtggggcggcccaaagaaa
accaagatggaagaggccagagagctgttagcctctactatcctcacccatgtacctgtt
aaagagtttaactttcgagctaagtgtatctacctcgctgtgatggtgcgtagagtgatt
ctcgctcaaggggacaacaaagtggacgatcgtgattactatggaaacaaacgtctggag
ttggctggccagctcctgtctctgctgtttgaggatctgtttaagaagttcaactctgag
ctgaagaagatcgctgaccagatcatccctaaacagagagcagctcagtttgatgtggtg
aagcacatgagacaggaccagatcactaacggcatggttaacgccatctctactgggaac
tggtccctaaagaggtttaagatggacaggcagggtgtgactcaggttctctcccgcctc
tccttcatctcagccctgggcatgatgaccaggatctcctctcagtttgagaaaaccagg
aaagttagcggtcctcgctccctcagccctcccagtggggctatgctgtgcccctcagac
acacctgaaggagaggcttgtggtctggttaaaaatctggctctgatgacccacatcact
actgacatggaggacggccccatcgtcaagctggccttcaacctgggagtggaggacgtc
aaccttctgtgtggagaggagttgtcctaccccactgtcttcctcgtcttcctcaacggt
aacattcttggagtgatcagagagcatcagaagttggtctacaccttcagactcatgcgt
agagcaggttttataaacgagtttgtatccatttcaaccaatttgaccgaccgctgcgtg
tatatttcttctgatgggggccgtttgtgcagaccctacatcattgtaaagaatggacag
ccaactgtgaagaacaaacacattgaggaattgtctcagggctacagaacgtttgaggac
ttccttcatgagagtctggtggagtatttggatgtaaatgaagaaaatgactgtaacatt
gctttatatgagcatatgatctccaaggacacgacccatttggagattgaaccgttcacg
ctgctgggggtctgcgctggtttgattccttaccctcatcataaccagtcccccagaaac
acctaccagtgtgctatgggcaagcaggctatgggtactattggctataaccagaggaac
cgaatagacaccctgatgtacctgctagcgtacccacagaggcctatggtgaagacgaag
accatcgagctgattgactttgagaagctgcccgcaggccagaatgctactgtggctgta
atgagctacagtggctatgatatagaagatgccctggtgctcaacaaggcctctcttgac
agaggctttggtagatgtctagtgtacaagaacgctaagtgcaccttaaggcggtacact
aaccagaccttcgacaaagtgatgggtccaatgctggatgcggaaacacgcaagcccatt
tggagacacagcatcctggatgctgatggcatctgctcgcctggtgagagggttgaaaac
aagcaggtgctggtgaataagtcaatgcccaccatcacccaaacgccactggagggcagt
gcccagccaggccaaccacaatacagagacgtgccagtcacgtacaaaggagcgacagac
tcctacattgagaaggtgatgatctcctccaatgctgaggatgccttcttgatcaagatc
ctgcttaggcaaacacgtagaccagagatcggagacaagttcagcagtcgacatggacag
aaaggtgtgtgtggattgatcgttcctcaagaggacatgcccttctgtgactcgggaatc
tgccctgacatcatcatgaaccctcatggttatccctccagaatgactgttgggaagctg
attgagctattggctggtaaagcaggggtgctggatggacgttttcactacggcactgcc
ttcggtggcagtaaagtgaaggacgtgtgtgaggatcttattcgctatggatacaattac
cagggcaaggattatgtcacctcgggcatcacaggtatacctctggaagcctacatctac
ttcggtccagtctattatcagaaactgaagcacatggtgctggataaaatgcatgccaga
gcacgtggtccgagagcagtactcaccaggcagcccacagagggtcgttctagggatggt
ggtctccgtctgggagagatggaacgagactgtctcattggctatggagccagtatgctg
ctgcttgagcgactgatgatctccagtgatgcttttgaggtggacgtgtgtgaccaatgt
ggcttgctgggatattcaggatggtgtcattactgcaagtcttcgtgccatgtgtcgtct
ctacgaattccatatgcctgcaaactgctcttccaagaactgcaatccatgaacatcatc
cctcgcctcaaactggctcgatacaacgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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