KEGG   Clostridium chauvoei: BTM20_11515
Entry
BTM20_11515       CDS       T05083                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
cchv  Clostridium chauvoei
Pathway
cchv03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cchv00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BTM20_11515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cchv03019]
    BTM20_11515
   03400 DNA repair and recombination proteins [BR:cchv03400]
    BTM20_11515
Enzymes [BR:cchv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BTM20_11515
Messenger RNA biogenesis [BR:cchv03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BTM20_11515
DNA repair and recombination proteins [BR:cchv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BTM20_11515
SSDB
Motif
Pfam: RQC DEAD Helicase_C HRDC RecQ_Zn_bind ResIII MCPVI DUF763
Other DBs
NCBI-ProteinID: ATD55827
Position
complement(2513234..2514997)
AA seq 587 aa
MSTPIEILKKYFGYTSFREGQFEIISNILRRRDIFCIMPTGGGKSLCYQIPTMIQDGLTI
VISPLISLMKDQVDNVNDIGIEAEYINSTQSMEEIKNILRRCYSGKVKLLYIAPERLENE
FFNRMLRKLNISQIAIDEAHCVSMWGHDFRKSYRSIAPFINSLNKRPIVTAFTATATEEV
RKDVIKLLQLENYYMHLGSFDRENLAISIYKEEDKAEFVKDFIKEREEQSGIIYCATRKE
VDALYYYLKERNINIAKYHGGLKDQEKEYYQEEFLKDNIPIMIATNAFGMGIDKSNVRYI
IHFTLCKNIENYYQEIGRGGRDGEKTECILLYNRADIRTLEYLIYTTAGNDRKEIEIRKL
QKMIDFCETHDCYRMFILNYFGEINGVNYCSNCRNCLNNDDLRDFTIEAQMILSCVYRTR
EQYGISVLIDILRGFKGPKIIQYKLDKLTTYGIMKEYNSRFIRNLIKTLIDLGYVNLKEG
TYSMLKLNNKSIRVLKSKEKVICKLIDESEEKVIDKELFNKLRLWRKERSIKENIKPYII
FSDSTLIDLANNKPKNKEELLNIRGMGEKKFEKYGEEVLNLISGILT
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgagtactccaatagagatattaaaaaaatactttggatatacttcatttagagagggt
caatttgagataatatctaatattttaagaagaagagacattttttgtattatgccaact
ggtggtggaaagtcactatgttatcaaattccaactatgattcaagatggattaacaata
gttatatcacctcttatttctttaatgaaagatcaagtagataatgtaaatgatataggg
atagaagcagaatatataaacagtacacaatctatggaagaaattaagaatatacttaga
agatgttatagtggaaaagttaaacttttatacattgcaccagaaagattagagaatgaa
tttttcaatagaatgttaagaaagttaaatataagccaaatagctatagatgaagcacat
tgtgtttctatgtgggggcatgattttagaaaaagttacagaagcatagctccatttata
aacagtttaaataaaagaccaatagttacagcttttactgcaacagctacagaagaggta
agaaaagatgttataaaacttctacaacttgaaaattattatatgcatttaggaagcttt
gatagagaaaacttagctatatcaatatataaagaagaagataaagcagaatttgttaag
gactttattaaagaaagagaagaacaatcaggaattatttattgtgccacaagaaaagaa
gtagatgcattatattattacttaaaagaaagaaatattaacatagctaaatatcatggt
gggttaaaggatcaagaaaaagaatattatcaagaagaatttttaaaggataatattcct
ataatgattgcaactaatgcttttggaatgggaatagataaatctaatgttaggtatata
attcattttaccctatgcaaaaatatagaaaattattatcaggaaattggcaggggtggg
agagatggagagaaaacagagtgcatcttattatataatagggctgacattagaacctta
gaatatttaatatatacaacagcagggaatgatagaaaagaaatagaaataagaaagctt
caaaaaatgatagatttttgtgaaactcatgattgttatagaatgtttatattaaattac
tttggagaaataaatggtgtaaattattgtagtaattgtagaaattgcttaaataatgat
gatttaagagattttacaatagaagctcaaatgatattatcctgtgtatatagaactaga
gagcaatatggaatatctgtacttatagatatattaagagggtttaaagggcccaaaata
atacaatataaattagataaattaactacatatggaataatgaaagagtataatagtaga
tttattagaaatttaataaagacattaatagacttagggtatgtaaacttaaaggaagga
acatattctatgttaaagctaaataataaatctataagagttttaaaatcaaaggaaaaa
gttatttgtaaattgattgatgaaagtgaagaaaaagttatagataaagaattatttaat
aaattaaggctttggagaaaagaaagatctattaaagaaaatataaaaccatatataatt
ttctcagattcaactcttattgatttagctaataataaacctaaaaataaagaagagttg
ttaaatataagaggtatgggagaaaagaagtttgaaaaatatggagaagaggttcttaat
ttaattagtggtattttaacttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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