KEGG   Acetivibrio clariflavus: Clocl_0134
Entry
Clocl_0134        CDS       T01661                                 
Name
(GenBank) helicase, putative, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ccl  Acetivibrio clariflavus
Pathway
ccl03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ccl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Clocl_0134
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccl03400]
    Clocl_0134
Enzymes [BR:ccl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Clocl_0134
DNA repair and recombination proteins [BR:ccl03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Clocl_0134
SSDB
Motif
Pfam: AAA_30 AAA_19 HHH_4 SH3_13 UvrD_C_2 Viral_helicase1 AAA_11 HHH_5 PIF1 UvrD-helicase nSTAND3 AAA_22 Helicase_RecD UvrD_C DEAD NTPase_1 HHH_2 T2SSE SLFN-g3_helicase PhoH AAA MeaB Herpes_Helicase AAA_28 MobB ATPase_2 AAA_5 AAA_29 bpMoxR AAA_16 SRP54 NB-ARC Thymidylate_kin AAA_18 RsgA_GTPase HerA_C AAA_7 AAA_14
Other DBs
NCBI-ProteinID: AEV66886
UniProt: G8M079
Position
147989..150202
AA seq 737 aa
MLITFEGIIEEIIFSNEINGYTVCELRGEKETITAVGFMPFINVGEMIKVSGNWITHPDY
GEQLKVELYEKILPKTVEAIETYLASGLIKGVGPASAKKIVKRFGEDTINIIEFHPERLS
EIKGISHEKALRIGHAYHEQKELRNVVMFFQEYGISPTYCAKIYQIYGKDTIEVIRNNPY
KLSDEAIGINFKTADRIAKSIGIDPKSKFRICSGIKYVLSHIAMDGHTFAEEDKLKDYTS
KLLDVDLDNINDALISLLLDKSIYIERNETSSRVYLSAFYNAEAGVARKLAQLSSVRFEG
DLSDFDEKISEVQKKEGIILTQNQKDAIREALINGVLIITGGPGTGKTTIIKSIINFLIN
EGYEVLLAAPTGRAAKRMTEATGFEAKTIHRLLEMGYASKDDELVFARNEDNPIDADVVI
IDEMSMVDILLMNHLLKAIEIGTRLILVGDVDQLPSVGPGKVLQDLINSDVIKTVRLKEI
FRQAEESYIIVNAHRINNGEKPLLNNKEKDFFFVTRNSPEDIVKTIVDLCVRRIPCAYGF
EPMKEIQVLTPVRKGLVGVGNLNTELQALLNPKDKSKKEKVFRDFLFREGDRVMQIKNNY
NLRWWKDDGKGSEGAGVFNGDTGIIREIDDEEQKIVVFFDDDKVVEYDFSILDELEPAFA
MTIHKSQGSEFPVVIIPIFPGPQVLMTRNLLYTAVTRAKNLVVLVGNKDYLDVMINNERE
TNRNSGLAEKLRVCFGI
NT seq 2214 nt   +upstreamnt  +downstreamnt
atgttgattacttttgagggaataattgaagaaattatattttcaaatgaaataaacggt
tatacagtatgcgagcttagaggtgaaaaggagactataacagccgttggatttatgccc
tttatcaatgtgggagagatgattaaggtgtcagggaattggataactcaccctgactat
ggagagcagcttaaagttgaactatatgaaaaaatacttcctaaaaccgttgaagctata
gagacatatcttgcatcagggcttataaagggagtaggtccggcgagtgcaaagaagatt
gttaaaagatttggggaagatactataaatattattgagtttcatcccgagagattatcc
gaaataaagggcataagccacgaaaaagctttgagaatcggacatgcttatcatgagcaa
aaagaactaaggaatgtagtaatgttctttcaggaatacggtatcagtccgacatactgt
gcaaagatataccagatttatggcaaagacactatagaagtaatccggaataatccatac
aaactatccgatgaagcaataggcattaattttaaaactgccgacagaattgcaaagagt
atcggtatagatccaaaatcgaaattcagaatttgcagcggtataaaatatgttttgtct
catattgcaatggacgggcatacttttgcagaagaggacaagctgaaagattatacatcc
aaactgctggacgtagacttggataatattaatgacgctttaataagtttgttactggac
aaatcaatatatatagaaagaaacgagacttcttcaagagtatatttaagtgctttttac
aatgctgaagcaggtgttgccagaaaacttgcccaactttccagtgttagatttgaagga
gatttaagcgatttcgatgagaaaatatctgaggttcaaaaaaaagagggaattatactt
acacaaaatcaaaaagatgccataagagaagctttgataaatggagtgcttattattacc
gggggaccgggtaccggaaagaccactattattaaaagtataatcaactttttgataaat
gaaggctatgaagttttgcttgcagcaccaacgggcagagctgcaaagagaatgacagaa
gccacggggtttgaagcaaaaactattcacaggcttttggagatgggttatgcctcaaag
gatgacgaattggtgtttgcaagaaacgaagataatcctatagatgccgatgttgttatt
attgacgagatgtcgatggttgacatactcctaatgaaccatttgcttaaagccattgaa
attgggacaagactgatattggtaggagatgtggaccagcttccttcggtgggaccggga
aaggttttacaggatttgataaatagtgatgtgataaagacggtcagattgaaagaaata
ttcagacaggctgaagaaagctatataattgtcaacgcccacagaattaacaatggagag
aagcctttattgaataataaggagaaggatttcttctttgtgacaagaaattcgccggaa
gatattgtaaagaccattgttgacctttgtgtcaggagaataccctgtgcctatggtttt
gaacctatgaaagaaattcaggttctaacccctgtaagaaaaggacttgtgggagtagga
aatcttaatacggaactccaggcattgctgaatcctaaggacaaaagtaaaaaagagaaa
gtttttagagatttccttttcagagaaggcgatagggtaatgcagataaaaaataactat
aatcttagatggtggaaagatgacggcaaaggcagcgaaggtgccggagtttttaatggc
gacaccggaataatcagagaaatagacgacgaagaacaaaaaatagttgtattttttgac
gatgataaagtagtggaatatgacttcagtatactggacgagctggagcctgcttttgct
atgactattcacaaaagtcaaggatcggagtttccggttgtcataattcctatatttccg
gggcctcaggttctgatgacgagaaatctgctttatacggctgttacaagggctaaaaac
cttgtagtacttgtagggaataaagattatttggatgtaatgataaataatgaaagggag
acaaacagaaattccggcctggcagaaaaacttagagtatgttttggtatttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (38)   
   Pfam (38)   
All databases (48)   

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