KEGG   Chondrus crispus (carragheen): CHC_T00009053001
Entry
CHC_T00009053001  CDS       T02916                                 
Name
(RefSeq) WD40-repeat containing protein
  KO
K14558  periodic tryptophan protein 2
Organism
ccp  Chondrus crispus (carragheen)
Pathway
ccp03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ccp00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CHC_T00009053001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ccp03009]
    CHC_T00009053001
Ribosome biogenesis [BR:ccp03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    CHC_T00009053001
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 Utp12 NBCH_WD40 Ge1_WD40 WD40_like eIF2A Nup160
Other DBs
NCBI-GeneID: 17319341
NCBI-ProteinID: XP_005711624
UniProt: R7QVG7
AA seq 941 aa
MPAPPQTLRHLLGAPYRGGGLSFSTCGTSLFVSLGGRVQRLDLTAGRARTLPFEATRDLH
TISLSPRGDVLLAVDSLARATLLALPSGRVAARLSLRLPQVTAASVSPCATMVAISGPDA
VEVWRVPDSPVPAYAAFDRVARFNRGAAAKGALCWSADSKHVAVGSRDGVATVFTIPDHA
APGVRVRPLVLYGHREAVVFVRFCGKRGLVTMSSDGVLFCWRLRENSASVEEGSHADGQT
RVVVPLGAKLMSKHFVRQGGASRAKCAALHQQILTVGMSNGVFALYQLPEEMAGQESEAF
DAGLFEIGEMRKRKRAREGMNAADVSKKAGEEDGSEDEEEDDILDETVPRIGFTDLTLLH
TLSASGNAITDIEFNPTGEWIALASSQSGQIVIWEWRSETHILKQQSHVLAANAAAFSPD
GRAIATGSRDGRVKLWGVATGFCVATFTEHEASVSAVAFAAKDVIVTASLDGTVRAFDIR
RYRNFRVMVGPPPRRQFGCVAVDAAGDLIAAGCIDTFEVIVWSLRTGQVLEVLSGHKGPV
SGIAFRPRRGTLATSSWDRTVRLWDMYERKGNSETLEHSKEVLAVCFRPDGKEFAACTAS
GEIVLWDSERGTITGTIDGSRDAASGRLRESRTAAPLRGHFQTLSYSADGRFLLAGASSK
HVCMYHVPEGSRPTLVNKVVVTENQAFDGLLDRLNSKNLTISGHAMDTIADDDVEAEDYG
EARLAERNSLPGAASELKLRRKKLLKAEVKCVHACPTGRLWSAVTTEGVIVYSDASGNGT
DGVNDSLFDPTNLEVDITPEAAEKAARRRDYVAALTIALRLNEKDCLNAVVEKIPAEDIN
LVVDRVSSVYFSRLILLFAWRLDNTPHLEFNLRWAKRLLMAQGADAHNHVSDPAVVNTAL
RALQRACAAHSKRIMPLADRNEHMLKYLVTTAKRKKATEVS
NT seq 2826 nt   +upstreamnt  +downstreamnt
atgcctgcccccccccaaaccctgcgccatttgctgggggctccatatcgaggtgggggt
ctatccttctccacctgcggcacgtctctcttcgtctcgctaggcgggcgggtacagcgg
ctggatctcacggccgggcgcgcgcgcacgctccccttcgaagccacgcgcgacctacac
accatctctctatcgcctcgtggggacgtactcctggccgtcgattcgcttgcacgcgct
acgttgctcgctctcccgtcgggacgcgttgcggcccgcctctcgctccgcctcccgcaa
gttacagccgcgagcgtgtcgccatgcgcgactatggttgcaatctcagggccggacgcc
gtcgaggtgtggcgcgtgccggatagtccggtgccggcgtatgccgcttttgaccgcgtt
gctaggtttaacaggggggcagctgccaagggggcgctatgctggagcgctgattcgaag
catgtcgcggtgggttcgagggatggcgtggcgaccgtgtttaccattcctgatcacgct
gcgcctggtgtgcgagtgcgcccgctggtgctatacggccatcgggaggccgtggtgttc
gtcaggttttgcgggaagagggggctggtcaccatgtcatcggatggcgtgctgttctgt
tggcgtctacgggagaacagcgcgtctgtggaagagggttcgcatgctgatggtcagacg
cgtgtcgttgtgccgctcggggccaagctcatgagcaagcactttgtgaggcaaggcggg
gcgagccgagcgaaatgcgcagctcttcatcaacagattttgaccgttggtatgtcaaat
ggcgtgttcgcattgtatcagctgccggaggaaatggcggggcaggaatcggaggcgttt
gatgcaggtctgtttgaaattggagaaatgcgcaagcgaaagcgggcacgggagggcatg
aatgcagccgatgtaagcaagaaagccggggaagaagatgggagcgaggatgaagaagaa
gatgatatcctggacgagaccgttccacgcattggttttacagacttgactctcctgcac
actctcagtgcttccggaaatgcgatcacggacattgaattcaatccgactggggagtgg
attgccctcgcatcctctcaatctgggcaaatcgttatctgggaatggcgctcagagacc
cacattctgaaacaacagtctcacgttctggcggcaaatgccgccgctttcagtccagat
ggtcgagcgattgcaactggttccagggatggacgtgtcaagctgtggggcgttgccacg
ggcttttgtgtcgctacatttacagaacacgaggcgtctgtttccgcagtagcatttgcc
gctaaagatgtcatcgtgacagcatctctggatggaactgtacgagcgtttgacattcgc
aggtacaggaactttcgggtcatggtcggacctccgccgcggcggcagtttgggtgtgtc
gccgtggatgcggcgggtgacttgattgcggccggttgcattgacacattcgaagtcatt
gtgtggtctttgcgcactggccaggttctggaagttttgagtggacacaagggacccgtg
agcggtattgcgttcaggccgcgaagaggtacgttagcaacctcatcctgggatcgaaca
gtacgcctatgggacatgtatgagcgcaagggcaacagcgaaactctagaacacagcaag
gaggtacttgccgtttgcttccggccagatggaaaggagtttgctgcctgcacagcctct
ggggaaattgttctttgggattctgaaagggggacgatcacgggtacaatcgatggctct
cgagatgcagccagtggtagattacgggaatcccgaacagcagcgccactgagaggacat
ttccaaacgctttcatactctgctgatggtcgatttcttcttgctggtgcgtcatctaag
cacgtttgcatgtaccatgtacctgaagggagccgtccgactctggtcaacaaggttgtg
gtgacggaaaatcaggcctttgatgggcttctagaccgtcttaattccaagaaccttacg
ataagtggacacgcaatggacacaattgctgacgacgatgttgaggcagaagactatggc
gaggcgcgacttgcagaacgcaactcgctaccaggtgcggcttctgaactgaagttgagg
cggaaaaagcttctcaaggcagaggtgaaatgcgtgcacgcgtgtccgaccggacggctg
tggtctgctgtcacaacagaaggggtgattgtgtacagcgatgcgtcaggcaatggtaca
gatggggtgaacgatagcttatttgacccgaccaatttggaagtggatatcactcccgaa
gccgccgaaaaggcggcgcggcgacgcgactatgtagctgctctcacgatcgcgctgcgc
ctcaacgaaaaggattgtctcaatgccgtggtagagaagatcccagcagaggatatcaac
ctggtcgtggatcgagtctcctcggtctacttcagccggctgatcctgctgttcgcctgg
cggctagacaacactccccatctcgagtttaaccttcgatgggcgaagcggctgctcatg
gcacagggagcagatgcgcacaatcacgtatcagaccctgcagtcgtgaacacggcgtta
cgggccctgcaaagagcttgcgcggcacattcaaagcgcatcatgccgctcgcagatcga
aatgagcacatgctcaagtatctcgtaacaactgcgaaaaggaagaaagcgacggaggtg
tcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system