KEGG   Cupriavidus sp. USMAHM13: BKK81_14015
Entry
BKK81_14015       CDS       T04762                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ccup  Cupriavidus sp. USMAHM13
Pathway
ccup03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccup00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BKK81_14015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccup03021]
    BKK81_14015
   03019 Messenger RNA biogenesis [BR:ccup03019]
    BKK81_14015
Transcription machinery [BR:ccup03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BKK81_14015
Messenger RNA biogenesis [BR:ccup03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BKK81_14015
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25
Other DBs
NCBI-ProteinID: AOZ00236
Position
1:3191762..3193024
AA seq 420 aa
MHLTELKSLHVSALLEMAATLEIDNAQRMRKQELMFAILKKRAKMGETIYGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GQPPEAVKNRIMFENLTPLHPNRPLTLERDIKAEENITGRIIDMIAPIGRGQRALLVASP
KSGKTVMLQHIAHAIANNHPETDLFVLLIDERPEEVTEMQRSVRGEVVASTFDEPAIRHV
QVAEMVIEKAKRLVELKRDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNLEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFISDMDEVQSMEFILDKLKATKNNAEFFDMMRRGG
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgcacctgacagaactcaaatcgcttcacgtgtctgcccttctcgagatggccgcgacc
ctcgagatcgacaacgcacagcggatgcgcaaacaagaactgatgtttgcgatcctgaag
aagcgcgccaagatgggcgaaaccatctacggagacggcaccctggaagtcctgccggac
ggcttcggcttcctgcgctcgcccgagacctcctacctcgcgagcacggacgacatctac
atcagcccctcgcagatccgccgcttcaacctccacacgggtgactcgatcgaaggcgag
gtacgcacgcccaaggacggcgagcgctatttcgcgctggtgaaggtggacaaggtcaac
ggccagcctccggaagcggtgaagaaccgcatcatgttcgagaacctgacgccgctgcac
ccgaaccggccgctcacgctcgaacgcgacatcaaggcggaagaaaacatcaccggccgc
atcatcgacatgatcgcgccgatcggccgcggccagcgtgccctgctggtggcctcgccg
aagtccggcaagaccgtgatgctgcagcatatcgcccacgccatcgccaacaaccacccc
gagaccgacctgttcgtgctgctgatcgacgagcgtcccgaggaagtgaccgagatgcag
cgctcggtgcgcggcgaggtggtggcgtcgaccttcgacgaaccggccatccgccacgtg
caggttgcggaaatggtgatcgagaaagccaagcgcctggtcgaactgaagcgcgacgta
gtgatcctgctggattcgatcacgcgcctggcgcgcgcctacaacaccgtggtgccagcc
tccggcaaggtgctgaccggcggtgtcgacgccaacgcgctgcagcgcccgaagcgcttc
ttcggcgccgcgcgcaatctcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
atcgagaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaat
atggaagtgcacctggagcgccgcctcgccgagaagcgcgtctacccgtcgatcaacctc
aacaagtccggcacgcgccgtgaagagctgctgatcaagccggaaatcctgcagaagatc
tgggtgctgcgcaagttcatctcggacatggacgaagtccagtcgatggagttcatcctc
gacaagctcaaggcgaccaagaacaacgccgagttcttcgacatgatgcgccggggcggc
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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