KEGG   Corvus cornix (hooded crow): 104685087
Entry
104685087         CDS       T03546                                 
Symbol
ABCD4
Name
(RefSeq) lysosomal cobalamin transporter ABCD4 isoform X2
  KO
K05678  ATP-binding cassette, subfamily D (ALD), member 4 [EC:7.6.2.8]
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw02010  ABC transporters
ccw04146  Peroxisome
ccw04980  Cobalamin transport and metabolism
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   02010 ABC transporters
    104685087 (ABCD4)
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    104685087 (ABCD4)
 09150 Organismal Systems
  09154 Digestive system
   04980 Cobalamin transport and metabolism
    104685087 (ABCD4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:ccw02000]
    104685087 (ABCD4)
Enzymes [BR:ccw01000]
 7. Translocases
  7.6  Catalysing the translocation of other compounds
   7.6.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.6.2.8  ABC-type vitamin B12 transporter
     104685087 (ABCD4)
Transporters [BR:ccw02000]
 ABC transporters, eukaryotic type
  ABCD (ALD) subfamily
   ABCD4 subgroup
    104685087 (ABCD4)
SSDB
Motif
Pfam: ABC_membrane_2 ABC_tran AAA_16 SbmA_BacA AAA_30 AAA_7 AAA_22 nSTAND1 AAA_23 RsgA_GTPase nSTAND3 CoV_E
Other DBs
NCBI-GeneID: 104685087
NCBI-ProteinID: XP_019138467
Position
5:23528981..23545242
AA seq 675 aa
MTGGQYLLPRRLSLSHWDVQRDHFVLVQLLPQKRAGSRLDGLFLRRFLRLLAVLFPGWPS
PSALMFLTLLGVALLEQLVIYQVGVIPSQYYEVLGNKDFSGFKTLTAIAVTLIIVNSTLK
SFDQFICNMMYINWRKSLTEYLHSCYFQGQVYYSLHVLREDIDNPDQRISQDVERFCRQL
SSMASKLVISPFTLAYYTYQCFHSTGWLGPVSIFGYFVIGTMVNKVLMSPIVSKLVQQEK
LEGDFRFKHMQIRVNAEPAAFYRAGRVEHMRTDRRLQSLLKTQRELIGKELWLYIGINTF
DYLGSILSYVVIAIPIFSGVYGDLSPTELSALVSKNAFVSIYLIGCFSQLIDLSSTVTDV
AGYTHRIGELQETLLSLGRKKNGNYSEARTSWDLDSHSGEDPAPRDTAFLLERVTLSVPS
SGKLLIKDLSLRISQGNSVMIVGNTGTGKTSLLRVLGGLWESTQGSIRMLTCFGPRGVVF
LPQRPFFTDGSLREQVIYPLKEIYPLSGSADDERIVQFLELAGLTDLLARAGGLDEQVDW
NWYDILSPGEMQRLSFARLFYLQPKYADALGELQLICEMFLGDAALAYRRCLVGRGFVGL
MTFLSVLDEATSALTEEVEHELYRLCLQLGMTLISVGHRPSLEKFHSWILKLHGEGRWEL
TRCEKMKRLPSGEGH
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgacaggtgggcaatacctgctgcccaggcgactgtccctcagccactgggatgtccag
agggatcatttcgtgcttgtccagctccttcctcagaagagggctggctcccggctggac
gggctgttcctgcggcggttcctgcggctcctggccgtgctctttcctgggtggccctcc
ccgagcgccctcatgttcctgacgctgctcggtgtcgctttgctggagcagctggttatt
taccaggtcggcgtcatccccagccagtactatgaggtcctagggaacaaggacttctcc
ggattcaaaacattgactgccattgccgtgactctgatcattgtgaactccacgctaaaa
agtttcgaccagtttatctgcaacatgatgtacatcaactggaggaaatccctcactgaa
tacctccacagctgctacttccaaggccaggtctactacagcctgcacgtgctgcgtgaa
gacatcgataacccggaccagcgcatcagccaggatgtggagaggttctgcaggcagctc
agctccatggccagcaagcttgtcatctcacccttcacactggcctactacacataccag
tgctttcacagcacaggctggctaggcccagtgagcatctttgggtatttcgtcattggg
acaatggttaacaaagttttgatgagcccaattgtgtctaaacttgtgcagcaggaaaaa
ctggagggggatttcaggttcaagcacatgcagattcgtgtcaatgcagaaccagctgct
ttctacagggctgggcgagtggagcacatgcgcacagaccggaggctgcagagcctgctg
aagacccagagggagctgataggcaaggagctgtggctatacattgggatcaacaccttt
gattatctgggcagcatcctgagctacgtggtcattgccattcccatcttttctggggtc
tacggcgacctgagtccaacagagctcagtgcccttgtcagcaagaatgcctttgtttcc
atctacctcattggctgcttcagccagctcatagatctctccagcactgtgactgatgtt
gctggctacacacacaggattggtgaactgcaggagaccttgctgagccttggcagaaaa
aaaaatggtaattactcagaagccagaaccagttgggatttggacagccattctggggag
gacccagcgccaagggacacagctttccttctggagcgagtgacactctcagtaccctca
tctggcaagctgctcatcaaggacttgagcctcaggatctcacaaggaaacagtgtgatg
attgtgggaaacactggtacagggaagacatctctcctgagggtcctcggaggactctgg
gagagcacacaggggagcatcaggatgctgacctgctttggcccccggggagtggtgttc
ctaccacagcggcccttcttcacggatggaagcctgcgtgagcaggtaatctatcccctg
aaggagatctatccactctcagggtctgcagatgatgagaggattgtgcaattcctggag
ctggctgggctgactgatttgctggcaagggctggaggactggatgagcaggtggactgg
aactggtatgacatcctgtccccgggggagatgcagaggctctcatttgcacgactcttc
tacctccagccaaaatatgcagatgctcttggtgaactccagttaatatgtgaaatgttc
ttgggagatgctgctcttgcctacaggagatgtctggttgggagaggatttgtggggctt
atgacttttctttcagtgctagatgaagccaccagcgccttgacagaagaggtggagcat
gagctgtaccgtctgtgccttcagctgggcatgacactgatcagcgtgggacacagaccc
agcctggaaaagttccacagctggattttgaaacttcatggggagggaagatgggagctc
actcgatgtgagaagatgaagcgtctgccttctggggaaggacactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (14)   
   RefSeq(pep) (14)   
DNA sequence (14)   
   RefSeq(nuc) (14)   
Protein domain (12)   
   Pfam (12)   
All databases (55)   

Download RDF
DBGET integrated database retrieval system