KEGG   Corvus cornix (hooded crow): 104685591
Entry
104685591         CDS       T03546                                 
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
ccw  Corvus cornix (hooded crow)
Pathway
ccw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ccw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    104685591 (MSH6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ccw03400]
    104685591 (MSH6)
DNA repair and recombination proteins [BR:ccw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     104685591 (MSH6)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I PWWP MutS_IV MutS_II MUM1-like_PWWP DUF4280
Other DBs
NCBI-GeneID: 104685591
NCBI-ProteinID: XP_039423939
Position
3:15187965..15202734
AA seq 1345 aa
MSRQSTLLRFFSKAAPPPAGTEPRRRRSSGERNGLQAAGSPPGGAGRAAARRGENGVKGA
GGGAAAKAPSVSCEYSPGDLVWAKMEGYPWWPCLIYNHPIERTIVRGKGKSTRIHVQFFD
DSPTRGWISIKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMNKDKTKRLELAV
CNEPSDTEEEEEEEMEEMSENASGNSEDCNSEEDAKSNKRGMSRERAVKAKRRRVLDSDS
DHDGSDVEFKPDGKEAASSEEGSSGVDENESSDTEAESVAESPIKVPSKRKRGEVKKPAK
RSSLGNECSETPKRAPTVSSEAKSKLTSFAAPESFESQANASSGGTGGFSVWEHEKLDWL
QEGKRKDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFY
ELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTETPEMME
ARCKSTGHSTRFDKVVRREICRIITKGTQTYSVMDCDPSENHSKFLLCMKEKDDSAGTRV
YGVCFVDTSVGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILKGSLVS
CIQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLGLTPGE
NSELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDITTAKTVSSSSLFARTSQRMVL
DGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAV
EDLLAVPDKMSEVSEHLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKYSKKKI
ADFLSALEGFKVMNEIVDVMEEVASDFKSKVLKQLVTRKAKNPDGRFPDLSAELTRWDTA
FDHNQARKTGVITPKAGFDPDYDGALQDIKAVEEDLQKYLDKQRKLLGFKSVQYWGTGKN
RYQMEIPESAVSRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRR
LFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVILLPVENAPPFLELRNS
RHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLVVMAQ
LGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLVLVDEL
GRGTATFDGTAIASAVVKELAESIRCRTLFSTHYHSLVEDYSHSGAVRLGHMACMVENES
EDPSQETITFLYKFIEGACPKSYGFNAARLADIPEDVIQKGHRKAKEFEKTTLSLRVFRY
LCQVVDGATSDANAVRKLTAMINRL
NT seq 4038 nt   +upstreamnt  +downstreamnt
atgtctcggcagagcaccctgctccgcttcttctccaaggccgccccgccgccggccggc
accgagccccgccgccgccgctcctcgggggagcggaacggcctccaggccgccggcagc
cccccgggcggggcgggccgagcggcggcgcggcgcggcgagaacggcgtgaagggcgcg
gggggtggcgcggccgccaaggcccccagtgtgtcctgtgagtactctcctggggacttg
gtgtgggccaagatggaaggttatccctggtggccatgtctcatttacaaccaccccatt
gaaagaacaatagtcagaggaaaaggaaaatccactcgtatccatgtgcagttctttgat
gacagccctacaaggggttggatcagtattaaatacctgaagccatataaaggttcatca
gatggggagacaatgaagggaggtatgttttacagcacaaagcctgaaattaaaagagcc
atggtgttggcagacgatgccatgaacaaagataaaaccaagaggcttgaactggcagta
tgcaatgaaccttcagacacagaggaggaggaagaggaagaaatggaggagatgagtgaa
aatgcatcgggcaacagtgaagactgcaatagtgaggaggatgcgaaaagcaataagcga
gggatgagcagggaaagagctgtaaaagccaagagaaggagagtgctggattctgacagt
gaccacgatggctctgatgtggagttcaagcctgatgggaaagaagcagcaagcagtgag
gaaggcagcagtggggtggatgaaaatgagtcttctgacacagaggcagagagtgttgca
gagagccccataaaagtcccttctaaacgaaagagaggagaggtgaaaaagcctgctaaa
aggagtagcttgggaaatgaatgttctgaaacacccaaaagagccccaacagtctcctca
gaagccaagtctaagctgacatcgtttgcagcacctgaaagttttgagtctcaagcaaat
gctagcagtggaggcactggtggcttctcagtgtgggagcacgaaaagcttgactggctg
caggaagggaagaggaaggatgcgcacaggaggcgccagggtgaccctgattacgacccc
tgtactctgtatgtgcctgaagattatctcaacaagtgcacgccgggggtgcggaggtgg
tggcagctcaaaagccaaaactttgatgctgtgatttgctacaaggttggaaagttctat
gagttgtatcacatggatgcagtcactggcgtgaatgagctgggcctgatctttatgaag
ggcacttgggcccactcaggtttcccagaaactgcatttggccggttctctgatgtgctg
gtgcagaagggctacaaggtggcgcgcgtggagcagacggaaacgcccgaaatgatggaa
gcacgctgcaagtcaacgggccactccaccaggtttgacaaggtggtgcgccgggaaatc
tgcaggatcattaccaagggaacccagacctacagcgtcatggactgcgacccctccgag
aaccacagcaagttcctgctgtgcatgaaggagaaggatgactcggccgggacgcgcgtg
tacggggtctgctttgttgacacctccgtgggcaagttccacgttggccagttcccagac
gaccgtcactgctccagatttaggactttggtagctcattacactcctgtgcaggtgctg
tttgagaaggggaacctgtctgtggacacacagaagatactgaagggctcgcttgtttct
tgcattcaggaagggctgacctcgggttcccagttctggaatgcatctaaaacactaaaa
gtccttcttgaggaaggatatttcaaggagaagcagaattctgaaaatggatgttctctg
ccctctgtaatcaaatctctgacttcagaaagtgactccctgggattaactcctggtgaa
aacagtgaattagctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctg
attgatcaggagctgttatcgcaggcgaacttcgaggaatatgtccctgtggatatcact
actgcaaaaaccgtgagttcaagtagtttgtttgccagaaccagccagcggatggtgctg
gatggagtcaccctgatgaacttggaagtcctgcagaacggaaccaatggaagcacagaa
ggtactttgttggaaaggattgattcttgttgtacaccattcgggaagcgactcctgaag
cagtggctctgcgctccgctttgtaatcctaaatccatcaacgatcgtttggatgctgtt
gaggacctcctggcagtgccagataaaatgtctgaagtcagtgagcacctgaagaaactg
cctgaccttgaaaggctgctcagcaaaattcacagcattgggtcaccactcaaaagtcag
aaccatcctgacagcagggccatcttctatgaagaactcaaatacagcaaaaagaaaatc
gctgacttcctgtctgccctggagggatttaaagtaatgaatgaaattgtcgatgtcatg
gaggaggttgccagtgacttcaaatccaaagtcctgaagcagctggtcacccgcaaggcc
aaaaatcccgatggccgcttccctgacctgagtgctgagctcacgaggtgggacactgcc
tttgatcacaaccaggctcggaagacaggagtgattaccccaaaggcaggttttgacccc
gattatgatggagcactacaggatatcaaagctgtcgaggaagatcttcagaagtacctg
gataagcaacgcaagctgcttgggttcaaatctgtgcagtactgggggacaggcaagaac
cggtaccagatggaaatcccagaaagtgctgtatctcgtaatctgcccgaggaatacgag
ctgaggtcgagcaggaagggatacaagcgctactggaccaaggagattgagaagatgctg
gctgcgatggtgaacgccgaggagcgccgcgacgctgccctcaaggactgcatgaggcgc
ctcttctacaacttcgacaagaacagcaaggactggcagacagctgtggagtgcattgct
gtgctggatgtcttgatgtcccttgctcactacagtcaaggtggtgatggacccctgtgc
cgacctgtaattctgctgcctgtggaaaatgctcctcccttcctggaacttagaaattcc
cgccatccgtgcatcacaaaaactttctttggggatgattttattcccaatgatatcgta
attggcatcaaggatgaaggcagcagcagtgaggcctcctgtgtgctggtaaccggccca
aatatgggtggcaaatctacgcttatgcgacaggctggtctcctggtggtcatggcccag
ctggggtgctacgtgcccgcggaagcctgcaggctcacgcccatcgaccgcgtgttcacg
cggctcggagcctcggacaggatcatggccggtgaaagtaccttctttgttgaactgagt
gagacttccagcattctccagcatgcaacagagcattcccttgttctcgtggatgaactg
ggcagaggcacagccacgtttgacggaacagccatagcgagcgcggtggtgaaggagctg
gcggagagcatccggtgccggacgctgttctccactcactaccactccctggtggaggac
tattcccacagcggggctgtacgcctgggccacatggcatgcatggttgaaaatgagagt
gaagatccaagtcaggaaacaattacgttcctgtacaagttcattgaaggagcctgccca
aagagctacggcttcaatgcggcaagacttgcagatattccagaggatgtcattcagaag
gggcacagaaaagccaaagaatttgaaaaaacaaccctctcacttagagtatttaggtac
ctgtgccaggtggtggatggagcaaccagtgatgcaaatgcggttcggaaactcacagcg
atgatcaaccggctttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (43)   

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