KEGG   Corallococcus coralloides: COCOR_04062
Entry
COCOR_04062       CDS       T01780                                 
Symbol
deaD
Name
(GenBank) RNA helicase DeaD
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
ccx  Corallococcus coralloides
Pathway
ccx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCOR_04062 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ccx03019]
    COCOR_04062 (deaD)
   03009 Ribosome biogenesis [BR:ccx03009]
    COCOR_04062 (deaD)
Enzymes [BR:ccx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     COCOR_04062 (deaD)
Messenger RNA biogenesis [BR:ccx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     COCOR_04062 (deaD)
Ribosome biogenesis [BR:ccx03009]
 Prokaryotic type
  rRNA helicases
   COCOR_04062 (deaD)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII WSD CMS1 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AFE08541
UniProt: H8MVT1
Position
complement(5064647..5066455)
AA seq 602 aa
MKAPPPPAAPETPSFDALGLKPDLVEALTALGYEEPTPIQAAALPPLLAQKDLLGIAATG
TGKTAAFSLPLLQHLKPGAAAPHSTSALVLVPTRELAMQVSEAIHRYGQKLGVSVLPLYG
GQEIGRQLRVLKRGVDVIVATPGRALDHLRRKTLKLDQVQTVVLDEADEMLDMGFADDLE
AILSETPEQRQTALFSATLPPRIASIAERHLHEPVRVRIAKEKLEAGEMPRVRQTAYIVP
RAFKIATLGRVLDLESPTAAIVFCRTRTEVDELTTSLNGRGWRAHALHGGMSQEQRDRVI
KQFKSQAADLLIATDVAARGLDIPRLTHVVNFDVPNAPEAYVHRIGRTGRAGREGVAITL
LEPREHRLLRNIERLTGQRIEVSAVPTVSDLRARRLEMIRSSLRETLVGGELDAFRGIAE
DLSGEFSVMDVAAAAIKLLQEKEDEGKDTADQEIPQVSAPAERKFPRTERSGPPGRFADR
GAERPSRGPRTADRGERPERGERSERGERSERAPARPQRAPEWNVTRLFIGAGRTAGMRP
ADLVGAIAGEAGLESSRIGAIHIADMYSIVEVPEPDAARIISALKGSTLRGRKVTVRRDT
RD
NT seq 1809 nt   +upstreamnt  +downstreamnt
gtgaaagctcccccgcctcccgctgcccccgaaaccccctccttcgacgccctcgggctc
aagcccgacctcgtcgaggcgctgacggccctcggctacgaagagcccacccccatccag
gccgccgcgctcccgccgctgctggcccagaaggacctgctgggcatcgccgccacgggc
accggcaagacggccgcgttctcgcttccgctcctccagcacctgaagcccggcgccgcc
gcgccgcacagcacctccgcgctggtgctcgtgcccacgcgcgagctggccatgcaggtg
tccgaggccatccaccgctacggccagaagctgggcgtgagcgtgctccctctctacggc
ggccaggagatcggccggcagctgcgcgtgctcaagcgcggcgtggacgtcatcgtcgcc
acgccgggtcgcgcgctggaccacctgcgccgcaagacgctgaagctggaccaggtgcag
accgtggtcctggacgaagcggacgagatgctcgacatgggcttcgcggacgacctggag
gccatcctctccgagacgcccgagcagcggcagacggcgctgttctccgccaccctgccc
ccgcgcatcgccagcatcgcggagcgccacctgcacgagccggtgcgtgtgcgcatcgcg
aaggagaagctggaggccggcgagatgccgcgcgtccggcagacggcctacatcgtcccg
cgcgcgttcaagatcgccacgctggggcgcgtgctggatctggagtcgcccacggccgcc
atcgtgttctgccgcacgcgcacggaggtggatgagctcaccacgtccctcaacggccgg
ggctggcgcgcgcacgcgctgcacggcggcatgagccaggagcagcgcgaccgcgtcatc
aagcagttcaagtcgcaggcggcggacctgctcatcgccacggacgtcgcggcgcgcggc
ctggacatcccccggctgacgcacgtggtgaacttcgacgtgcccaacgcgccggaggcc
tacgtgcaccgcatcggccgcacgggccgcgccggccgcgagggcgtggccatcaccctg
ctggagccccgcgagcaccggctgctgcgcaacatcgagcggctcaccggccagcgcatc
gaggtctccgcggtccccaccgtgtcggacctgcgcgcgcgccggctggagatgatccgc
tcgtcgctgcgcgagacgctcgtgggcggggagctggacgcgttccgcggcatcgcggag
gacctgtccggcgagttcagcgtcatggacgtggccgccgccgccatcaagctcctccag
gagaaggaggacgagggcaaggacaccgctgaccaggagattccccaggtgtcggcgccg
gcggagcggaagttcccgcgcacggagcgctccgggcctccgggccggttcgcggaccgc
ggcgccgagcgtccgtcgcgaggcccccgcaccgccgaccggggcgagcgccccgagcgc
ggcgagcggtccgagcgcggcgagcggtccgagcgggcccccgcgcgtccccagcgtgcg
ccggagtggaacgtcacgcgcctgttcatcggcgcgggccgcaccgcgggcatgcggccg
gcggacctcgtgggcgccatcgcgggcgaggcggggctcgaatcctcgcgcatcggcgcg
atccacatcgcggacatgtactccatcgtggaggtgccggagccggatgccgcgcgcatc
atctccgcgctgaagggctccacgctgcgcggccgcaaggtcaccgtgcgccgcgacacc
cgcgactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (30)   

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