KEGG   Campylobacter coli RM4661: YSS_06240
Entry
YSS_06240         CDS       T03166                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ccy  Campylobacter coli RM4661
Pathway
ccy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ccy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YSS_06240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ccy03021]
    YSS_06240
   03019 Messenger RNA biogenesis [BR:ccy03019]
    YSS_06240
Transcription machinery [BR:ccy03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     YSS_06240
Messenger RNA biogenesis [BR:ccy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     YSS_06240
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 Spore_III_AA Mor ATPase_2 AAA OB_RNB AAA_22
Other DBs
NCBI-ProteinID: AHK77109
Position
1165114..1166445
AA seq 443 aa
MLQNYCFLARTYGKRKKQHQRTHIPVEGYKIEDLKLLDLENLVKIANECEIENPREFRRQ
ELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQIRKFALR
VGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTEKIKLEYDAM
KLTGRILDLFTPIGKGQRGLIVAPPRTGKTELMKELASAIAKNHPEMHLIVLLVDERPEE
VTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVIILLDSITRLARAYN
TATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTGSRMDDVIFEEF
KGTGNSEIVLDRNISDRRIYPAINIIKSGTRKEELLQGVAELQKIWAIRSAISQMDDIEA
LKFLYSKMLKTKDNVELLSIMNE
NT seq 1332 nt   +upstreamnt  +downstreamnt
ttgctacaaaattactgctttcttgcgaggacttatggaaaaagaaaaaaacaacatcaa
agaacccacattccagtggagggttataaaattgaagacttaaaactacttgacttagaa
aatctagttaaaatagctaatgaatgcgagatagaaaatcctagagaatttcgtcgtcaa
gaacttatttttgaaattttaaaagctcaaaccaaaaagggtggctttatcctcttcaca
ggaattttagaaatttcttcagaaggttatggctttttaaggggtatggattcaaattta
agcgatagtgtcaatgacgcctatgtttcaaactcacaaattcgcaaatttgccctgcgc
gtaggcgatatagtaactggacaagttagagagcctaaggatcaagaaaaatactatgct
cttttgaaaatagaagcgattaattatttgcctttgcaagaagctaaagaaagaccttta
tttgataacttaactcctatttttccaacagaaaaaatcaaactcgaatacgatgctatg
aaattaactggaagaattttagatctttttacccctataggtaaaggacaacgcggactc
atcgtagcaccgccaagaacgggtaaaacagaacttatgaaagagctagcaagcgcgatt
gctaaaaatcaccccgaaatgcatttaatcgttcttttagtcgatgaaagacctgaagag
gttactgatatgcaaagatgtgtaaagggtgaagtgtttagctctacttttgatttacct
gcttataatcatgttcgcgtagcagaactagttatcgaaaaagcaaaaagaatggtagaa
acaggcaaagatgttatcattttactagatagtatcacaaggcttgctagagcttataac
accgcaactccaagcagtggaaaggtattaagtggtggggtggatgctaatgcacttcat
aaacctaaacgcttttttggtgcagcaagaaatatagaaaatggcggatctttgaccata
gtagcaactgcacttatcgacacaggttcaagaatggatgatgtgatttttgaagaattt
aaaggcacaggaaatagcgaaatagtcttagatagaaatatttcagatagaagaatttat
cctgcgattaatatcatcaaatctggaactcgaaaagaagaacttttacaaggagtagca
gagctacaaaaaatttgggctattcgctcggcaatttcccaaatggatgatatcgaagcg
cttaaatttctttattcaaaaatgttaaaaactaaagacaatgtagaacttttatctatt
atgaatgagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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