KEGG   Chelatococcus daeguensis: BOQ54_02940
Entry
BOQ54_02940       CDS       T04583                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
cdq  Chelatococcus daeguensis
Brite
KEGG Orthology (KO) [BR:cdq00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cdq03032]
    BOQ54_02940
   03400 DNA repair and recombination proteins [BR:cdq03400]
    BOQ54_02940
Enzymes [BR:cdq01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BOQ54_02940
DNA replication proteins [BR:cdq03032]
 Prokaryotic type
  DNA Topoisomerases
   BOQ54_02940
DNA repair and recombination proteins [BR:cdq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BOQ54_02940
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom HC2 Toprim_4 UDPG_MGDP_dh_C
Other DBs
NCBI-ProteinID: APF36402
Position
635984..638635
AA seq 883 aa
MKVVVVESPAKAKTINKYLGKDYEVLASFGHIRDLPAKDGSVDPEADFAMVWELEDRGSK
RVSDIARAVKGADKLILATDPDREGEAISWHVVEALTQKKVLKDVAVERVTFNAITKDAV
LEAMRQPRQIDQALVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
EREIETFVPREYWSLVVVLKTDAGATFEARLVGADGKKIARLDIGQGEEAEAFRKLLETA
AFRVTAVEAKPAKRHPQPPFTTSTLQQEASRKLGFAPARTMQLAQRLYEGVEIGGETVGL
ITYMRTDGVDMAPEAVAGARRVIAKEFGDAYVPGVPRKYTTKAKNAQEAHEAVRPTDLGR
LPAMVARQLDPDQARLYELIWTRTVASQMESAVFERTTVDIEARAGGRLLELRATGQVVT
FDGFLKLYQEGRDDEEDEESRRLPAMKAGDALEKREIRATQHFTEPPPRYTEASLVKRME
ELGIGRPSTYAAVLAVLKERGYVEIDKKRLVPEDKGRIVTAFLESFFRRYVEYDFTADLE
EQLDRVSNNEIDWKTVLRDFWRDFIAAIDETKSLRMSEVLDALNEELGPHIFPKKADGSD
PRACPSCGTGQLSLKLGKFGSFIGCSNYPQCRYTRQLAANGDGEASAAADSGPRTLGKDP
ETGLDVTLRDGRFGPYVQLGEGDKPKRQTLPKGLAPDLVDLEKALKLLSLPREVATHPES
GKPILAGIGRFGPYVQHDKTYANLGKDDDVLDIGANRAIDLIITKEQGGGRRGGAAEPGR
VLGEDPESGKQLSVKAGRYGPYVTDGTTNATLPKSMDKDALTLEEAIALIRAKRASDGGK
KASAKKPAAKKAPAKKAAAKKPAEKAPAKKAAGKPTKKAAAGE
NT seq 2652 nt   +upstreamnt  +downstreamnt
atgaaagtcgttgtcgtcgaatcccccgccaaggctaagacgatcaacaagtacctcggc
aaggactacgaggtgctggcctcgttcgggcacatccgcgacctgccggccaaggacggc
tcggtcgatcccgaggccgatttcgccatggtctgggaactggaggaccgcgggtcgaag
cgcgtgtccgacatcgcgagggcggtgaagggggcggacaagctcattctcgccaccgac
ccggaccgagagggcgaggcgatctcctggcacgtcgtcgaggcgctgacccagaagaaa
gtgctgaaggacgtggccgtcgagcgcgtcaccttcaacgccatcacaaaggatgcggtg
ctggaggcgatgcgccagccgcgccagatcgaccaggcgctggtcgatgcctatctcgcc
cgtcgtgcgctcgactatctcgtcggtttcaacctctcaccggtgctgtggcgcaagctg
cccggcgcccgttccgccgggcgcgtgcagtcggtggcgctgcgcctcgtctgcgaccgc
gagcgcgagatcgagaccttcgtgccgcgcgaatactggtcgctcgtcgtcgtcctcaag
acggacgcgggcgcgaccttcgaggctcgcctcgtcggtgccgacggcaagaagatcgcc
cgtctcgacatcggccagggcgaggaggctgaagccttcaggaagttgctcgagacggcg
gctttccgtgtcaccgccgtcgaggccaagcccgccaagcgccacccgcaaccgccgttc
acgacctccaccctgcagcaggaggcctcgcgcaagctgggcttcgccccggcgcgcacc
atgcagctcgcccagcggctttacgagggcgtcgagatcggcggcgagacggtcggcctc
atcacctatatgcgtaccgacggcgtcgacatggccccggaggcggttgccggcgcccgc
cgcgtcatcgccaaggagttcggcgacgcctatgtacccggcgtgccgcgcaagtatacg
accaaggccaagaacgcgcaggaggcgcatgaggcggtacgccccaccgatctcggccgc
ctccccgccatggtggcgcgccagctcgaccccgatcaggcgcggctctacgagctcatc
tggacccgcaccgtggcgagccagatggaatcggccgtttttgagcgcaccacggtcgat
atcgaggcaagggccggcggtcgccttctcgagctgcgcgccaccggccaggtggtgacc
ttcgacggcttcctgaagctctaccaggaaggccgcgacgacgaggaagatgaagagagc
cgccgcctgcctgccatgaaggccggcgatgccctcgagaagcgcgagatccgcgcgacg
cagcatttcaccgagccgccgccgcgctataccgaggcgagcctcgtcaagcgcatggaa
gagctcggcatcggccggccctcgacctatgcggccgtgctcgccgtgctcaaggagcgc
ggctatgtcgagatcgacaagaagcgcctcgtgcccgaggacaagggccggatcgtcacg
gccttcctcgagagcttcttccgtcgctatgtcgaatacgacttcacggccgacctcgag
gagcaactcgaccgcgtctccaacaacgagatcgactggaagacggtgctgcgcgatttc
tggcgcgacttcatcgccgccatcgacgagacgaagagcctgcgcatgagcgaggtgctc
gacgctctcaacgaggagctcgggccgcacatcttcccgaagaaggcggacggcagcgac
ccgcgcgcctgcccgagctgcggcacgggtcaattgtcgctgaaactcggcaagttcggc
tcctttataggctgctccaattatccgcagtgccgctacacgcgccagctcgccgcgaac
ggagacggtgaggcgagcgccgccgccgacagcggcccgcgcaccctcggcaaggaccct
gagacggggctcgacgtcacgctgcgcgacggccgcttcggcccctatgtgcaactcggg
gaaggcgacaagcccaagcgccagacgctgcccaagggccttgcgccggatctcgtcgac
ctcgaaaaggcattgaagctgctgtcgctgccgcgcgaggttgcgacacaccccgagagc
ggcaagccgatcctcgccggcatcggccgcttcgggccttacgtccagcacgacaaaact
tatgccaatctcggcaaggacgacgacgtgctcgacatcggtgccaaccgggccatcgac
ctgatcatcacgaaggagcagggcggcggacgccgcggcggcgcggccgagccgggccgg
gtgctgggcgaagatccggagagcggcaagcagctcagcgtcaaggccggccgctacggg
ccctacgtcaccgacggcacgaccaacgccaccctgcccaagagcatggacaaggacgcc
ttgacgctggaggaggccatcgccctcatccgcgccaagcgcgcctccgacggcggcaag
aaggcatcggcgaagaagccggccgccaagaaggctcctgcgaagaaggctgctgcaaag
aagccggctgaaaaggcgcccgctaaaaaggcagccggcaaaccaacgaagaaggcggca
gcgggggaatag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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