KEGG   Corynebacterium epidermidicanis: CEPID_04265
Entry
CEPID_04265       CDS       T03955                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
cei  Corynebacterium epidermidicanis
Pathway
cei03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CEPID_04265 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cei03400]
    CEPID_04265 (mfd)
Enzymes [BR:cei01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CEPID_04265 (mfd)
DNA repair and recombination proteins [BR:cei03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CEPID_04265 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII AAA_22 UB2H RecG_dom3_C YmdB AAA_30
Other DBs
NCBI-ProteinID: AKK02725
UniProt: A0A0G3GQ94
Position
878957..882562
AA seq 1201 aa
MAQTPMLAGLLKVAASDPKLKGLLENVGTQRLHIEAKHQALPWTVATLAHRAPVLVVVAT
GREAEDLTAELRAILGDAVAWFPSWETLPHERMSPGVDVVGRRAEVLAHLNQLKVVVTAA
RGFAQPVLKQDYQPLQVTAGQDYDFATLTRELVHRAYSHVDMVAKRGQFATRGGIIDVFP
TTADHPVRLEFWGDEVTDIRAFAVADQRAIPDMSYTSVDIFPARALLIDDAVAKRAADLA
VAHPGNPALVELLTKVSEKQPAEGMEALIPALTDADMVALPDVMPAGTHTLLVDPEKIRT
RVADLEATDQEFLAAGWEAAAMGADGPVAVSGLDLTASSYRSFESLLLSSEITWTFAPEG
MLVADAADTLPLDFEAAPAPRGDLKEIDTLMAMLLAHTTAGGRAAFVAPAQGAIKRMVDR
FKEKGIPTKVATAGWQPTAGEVTLYQALSHNGLVFPGAQLVVVTETDLTGNRVGDIAGAK
RRPAKKRNRVDPLALKTGDLVVHETHGIGRFLKMTERTINTGDGTSRREYLVLEYASSRR
GGPADQLYVPMDSLDLLSKYVGGEKPALSKMGGADWKNTKKKARAAVREIAGELVELYAK
RQAAPGHAFAPDSPWQAEMEDNFPFVETEDQMLAIEAVKADMEKPVPMDRVVVGDVGYGK
TEVAVRAAFKAIQDGKQVAVLVPTTLLAQQHLSTFEQRMEGFPVTIRGLSRFTSASESKE
TLAGLLDGTVDIVIGTHRLLQTGVHWKNLGLVIVDEEQRFGVEHKEHIKALRTAVDVLTM
SATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGAQEDKQVAAAIRRELLRDGQIFY
VHNKVSSIEKKAREIRDLVPEARVVVAHGQMSEELLEQTVQGFWDREYDVLVCTTIVETG
LDIANANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGITLTETSYDRLATIA
QNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGKV
LDATDKEPREIRVDLPVDAHIPESYINSERLRLEVYRKLASSTSETDLQLAVEEMEDRYG
PIPVEVSRLLAVARLRHIMRAARLTDVAIQGTRIKVHPVELPDSKQVRLRRLYPGSTYRA
AAQAIQLSIPKAGNGMGAPQLRDVELLQWVADFIAGMFDVPAVSVSGGDSSKKDRVISVG
D
NT seq 3606 nt   +upstreamnt  +downstreamnt
atggcgcagacccccatgctggcagggctgctaaaagtagcagcttctgacccgaagctg
aaggggctattggaaaacgtcggtacgcagcgcctgcatattgaggccaaacatcaagcg
ttgccgtggactgtcgccacgttggcgcaccgcgctcccgttctcgtggtcgttgctact
gggcgtgaagccgaagacctcactgccgagctgcgtgcgattctcggcgacgccgtcgct
tggtttccgtcctgggagaccctgccgcacgaacggatgagcccgggcgtagatgtcgtc
ggccggcgcgccgaggtgctcgcacaccttaaccaactcaaagttgtagtcaccgcagct
cgcgggttcgcccagccagtgctcaaacaggactaccagccgctccaggtaacggcgggc
caagactacgacttcgcgacactaacccgggaactcgtccaccgcgcgtactcccacgta
gacatggtggcaaagcgcggacaatttgcgacccgtggcggcatcatcgacgtgttccca
accaccgcggaccatccggtgcgactggaattctggggcgatgaagtcacagatattcgt
gccttcgcggtcgccgaccagcgcgcaatcccggacatgagctacacatccgtggacatc
tttccagccagggcgctgcttatcgacgacgccgtcgccaagcgcgcagccgacctggca
gttgcgcatcccgggaatccagccctcgtcgagctgctgacaaaggtgtccgaaaagcaa
ccggcagaaggcatggaagcccttattccggcgcttactgatgcggacatggtggcattg
ccggacgtgatgcccgcgggcacgcacaccttgctcgtggacccggaaaagattcgcacc
agagtcgccgacctggaagcaaccgaccaagaattcctcgcggccggttgggaagccgct
gccatgggagctgatggccccgtcgcagtgagtggccttgacctaacagctagttcctac
cgatcattcgagtccctgctgctctccagcgaaatcacttggacgttcgctccggaaggc
atgctcgtcgctgatgcagcagatacgttgccacttgacttcgaggcggcaccggctccc
cgtggtgatctcaaagagatcgacacgttgatggcgatgttgctcgcgcacactaccgcc
ggtggacgcgcagcgtttgttgctcctgcgcagggtgccatcaagcggatggttgaccgc
ttcaaagagaagggcatccccaccaaggtggctaccgcagggtggcagcctactgctggg
gaagtgactctctaccaggcgctttcacacaacggcttggttttccctggcgcacagctt
gtagttgtcaccgaaactgacctgaccggcaaccgcgtgggcgatattgcgggagcgaag
cgtcgaccagccaagaagcgaaaccgagttgatccgctggcgctgaaaaccggcgatctg
gtggtgcatgagacgcacggtatcggacgattcctgaaaatgaccgagcggaccatcaac
accggtgatggcacgtcgcgtcgggaatacctggtgctggaatacgcgtcttcgcggcgc
ggcggcccggctgaccagctgtatgtccccatggattcccttgacctgctgtcaaagtac
gtaggcggggaaaagccggcgctgtccaagatgggtggtgcggactggaagaacacgaag
aagaaggcccgcgccgcggttcgggaaattgcgggcgagctggttgagctctacgccaaa
cgtcaagccgcgcctggccacgcattcgcgccggactcaccgtggcaggccgagatggaa
gacaactttccgttcgtggaaactgaggaccagatgcttgccatcgaggctgtgaaagcc
gacatggaaaagccggtgccgatggaccgcgtggtggtcggcgacgttggctacggtaaa
accgaggtcgccgtgcgcgcagcatttaaagcgatccaagacggaaaacaggtggcggtg
ctcgtgccgacgaccctgctcgcacagcagcacttgtcaacatttgagcagcgtatggag
ggtttcccggttactatccgtggcctttcccgctttacttcagcctccgagtcgaaggaa
accctagctggactcctcgacggcaccgtcgacatcgtcatcggtacccaccgcctcctc
caaaccggcgtgcactggaagaacctcggactggtcatcgtggacgaagagcagcgcttc
ggcgtggagcacaaggaacacatcaaagccttgcgcaccgccgtcgatgtgctcaccatg
tctgccaccccgatcccgcgcaccctggagatgtcgatggccggcatccgcgaaatgtcg
accattctgaccccgccggaggaccgccaccccgtgctcacctacgtgggcgcacaggaa
gacaagcaggtcgccgcggctattcgacgcgagctgcttcgcgacggccagatcttctat
gtccacaacaaagtttcttcgattgaaaagaaggcccgcgagatccgcgatctggtgccg
gaagcccgcgtcgtcgtggcgcacggccagatgtccgaggaacttctcgaacaaacagtg
cagggtttctgggatcgcgagtatgacgtcctcgtgtgtaccaccatcgtggaaaccggc
ctggacatcgcgaacgcgaacacattgatcgtcgaaaatgcgcaccatatgggcctttcc
cagctgcaccagctgcgtggccgcgtggggcgctcccgcgagcgtggctacgcctacttc
ctctatccgaaggggatcaccctgacggagacgtcgtacgatcgtcttgcgaccatcgcc
caaaataatgacctgggcgctggcatggccgtggcgatgaaagacctcgaaatgcgtggc
gccggcaacgtgctgggcgctgagcagtccggccacatcgcgggcgtcggcttcgatctc
tatgtccgtctcgtcggcgaggccgtggaagcgttccgagcgatggccgacggcaaagtc
ctcgatgccacggataaagagccccgcgaaatccgcgttgacctgcctgtcgacgcccac
atcccggagtcctacatcaactccgagcgcctgcggctcgaggtttaccgcaaattggca
tcttccacttccgagactgacttgcagttggccgttgaagaaatggaagaccgctacggc
ccgatcccggtcgaagtatcccggctgcttgcggttgcccggctgcgccacatcatgcgc
gccgcgcgtcttaccgatgtcgcgatccagggcacccgcatcaaggttcaccccgtcgag
ctgccggattctaagcaggtgcgcctgcgccgtctctacccaggctcgacttaccgcgcg
gcggcccaggcaattcagttgtcgattccgaaggccggcaacggcatgggagcaccgcag
cttcgcgacgtcgagctgctccaatgggtagccgacttcatcgccgggatgtttgatgta
ccggcggtgtcggtgtctggcggagattcatccaagaaggaccgcgtgatttcagtaggg
gactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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