KEGG   Caenorhabditis elegans (nematode): CELE_B0240.4
Entry
CELE_B0240.4      CDS       T00019                                 
Symbol
npp-22
Name
(RefSeq) Nucleoporin ndc-1
  KO
K14315  nucleoporin NDC1
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_B0240.4 (npp-22)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_B0240.4 (npp-22)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     CELE_B0240.4 (npp-22)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 179607
NCBI-ProteinID: NP_505962
WormBase: WBGene00007118
Ensembl: WBGene00007118
UniProt: Q8I4N3
Position
V:complement(11731120..11733472)
AA seq 588 aa
MMGDSHSSFTTTTDEHLYNQFSPGRRKNDFPAASSSSSSPNLRRSPNRTVSSPRVQQKPI
TIFDQIVDWFQAEISVRKRLAGAACGYLSTIFFIVTVSILKLTIWAPFSSVQDSLAWWIY
PNAWASIIFVGIASVAMSLFSIIKFCKVDQLPRLAATDTFALAGVALEFVTRLTFVYTAF
CVADFSFSREFAFVAISLAIAISSALVVFRSDYQLNFSHIQVNSVKTLIDFGTSLPYANI
SEICGIDAAISYTAAVALILVVGPMVSGFSAWWLLLNIPFHVVLFGLCFTQQFYSKISMK
IVNQIVMKPISFPFPPPYTVHSPTPEQTRTLPNVIETDDSLLKFFALHDLRTIAWNDEKR
RVDVFSLSQPGKHPRNWKAVSLPCVRMLDELCSRMTVSAARLVGYSWDDHDIENEDVPRD
ALLMPRKMREMAYRGTGQSRQQKSMAPIRSHNTQTVGLLSKISNFLGFGVTEKLVISRFD
AHMNAYAAEALYMLVVDSMGEDRFGVVQKDLKDLITLLCKLIAAIDTYERAKASVADKSD
VTFLRIVDASLKSSLQRVVTTFGSHLSSLNLPEEHSRTIRMICLTDEL
NT seq 1767 nt   +upstreamnt  +downstreamnt
atgatgggtgatagtcattcttcattcacaacaacgacagatgaacatctatataatcaa
ttttctccgggaagaagaaagaacgattttcccgctgcaagcagttcatcatcttcacca
aacttgcgaaggtccccaaaccgcacagtcagttcaccgcgtgttcaacagaagccaatc
acaattttcgatcaaatcgtggattggtttcaagcggaaatcagtgttagaaagagatta
gctggtgctgcatgcggatatctgtccaccattttcttcattgtcacagtatccattttg
aaactcacgatttgggcccctttcagctcagttcaagactccctggcgtggtggatttat
ccaaacgcatgggcctcaatcattttcgttggtattgcttctgtagccatgtctcttttc
agcattatcaaattttgcaaagttgatcaacttccacgattggcagctactgatacgttc
gctttagctggagttgcactcgaatttgttacccgcctcacatttgtctacacagccttc
tgtgttgcggatttctcattttccagagaattcgcctttgttgctatttcgctcgccata
gcaatttcatcagcgctagtcgttttccgttcggattatcaactcaatttttcgcatatc
caagtgaattctgttaaaactctcatcgattttggaacgtctcttccatatgcaaatatt
tctgagatctgtggaattgatgcggctatctcatacaccgcagccgtagctttgattctt
gttgttggacccatggtttctggattctcagcatggtggcttctattgaatatcccattc
catgttgtattgttcggactatgcttcacgcaacagttttattcaaaaatatccatgaag
atagtgaatcagattgttatgaagcccatcagcttcccgttcccgcctccatatacagtt
cactcaccaactcctgaacagacaagaactcttccaaatgtcatcgaaactgatgattca
cttctgaaattctttgctcttcatgatcttcgaacaattgcgtggaatgatgagaagcga
cgggtggatgttttctctctatcgcaacctggaaaacatcctcgtaactggaaagctgtt
tccttgccttgtgtaagaatgcttgatgaactttgttcaaggatgactgtttcggctgct
cgtctcgtcggatattcttgggatgatcacgatattgaaaatgaagatgtcccacgagat
gctctcctgatgccaagaaaaatgcgtgaaatggcttatcgtggcacaggacaaagccgt
caacagaaaagcatggctcctattcgatctcacaacacacaaactgttggacttcttagc
aaaatctctaacttcctagggtttggagtcactgaaaaactagtgatttctcgttttgat
gctcatatgaacgcctacgccgctgaggctttatacatgcttgttgttgattctatggga
gaagacagattcggagttgttcagaaagacttgaaagatctcatcacgctgctctgtaaa
ctcattgcagccattgacacatatgaaagagctaaagcgtcagtagctgacaaatcagat
gtgacattcctgcgtatcgttgacgcatcgctcaaatcaagtcttcagagggttgttacc
acattcggaagccatttgagttcactcaatctcccagaggaacactcacgaaccattcgg
atgatttgtctcacagatgaattgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (36)   

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