KEGG   Caenorhabditis elegans (nematode): CELE_F26A3.8
Entry
CELE_F26A3.8      CDS       T00019                                 
Symbol
rrf-1
Name
(RefSeq) RNA-directed RNA polymerase
Organism
cel  Caenorhabditis elegans (nematode)
SSDB
Motif
Pfam: RdRP
Other DBs
NCBI-GeneID: 172523
NCBI-ProteinID: NP_001250555
WormBase: WBGene00004508
Ensembl: WBGene00004508
UniProt: G5ECM1
Position
I:complement(<7643431..>7649777)
AA seq 1601 aa
MSERSHGFIKFEFPEFDNSLQVIEGSIDTMLLTFTSVLRKYEIEIKSRQETQIVEEQDCD
CFFEINFEVESEQFDHTIIDAMHDYLSDLNVYVPYQRPNIVLHGSDFWLRTLDCHTEIPL
AAIYFGNIQGGTYFNHWQVSFSRENISSRDMLHKIHAEFEFDKTDMITVQFQCFEEKKQK
FEDSRKQKVRVNYQLTIRRDSIRRIIVDPRVEGCNTCVHFEVNCPPLIRKGYIDNDKSSF
HKPFYERQKRFDCDWRNGNVNHGNPQDAAIADSPFFTIEFHKEISTKEMYRVLSRLRSRT
KVLIEFANLPSIDVPMGSHYPYNRWNLKKSPTDSNAPIFREFLKEIFPPKYEIVDDKLID
VNEERKFSITYLIECLLSRGAIVKDQLLLNEQHWKNFLEIIIWYYRNDNQLCEAALEDLV
HLIDGRKRIGSILKCLDKICQKREVMKLVNGLTEKESIEGYQRVRKVIFTPTRVIYIAPE
TIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGKLLDRTANKYLEHGVRIANREYG
FLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNINFKPKIDEVRFQLGRFSEIENV
PKLMARLGQCFTQSRLTGVGLGRDDYCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEV
SQAMQFGKAVPSCFQIRFRGNKGVIAIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKF
QAKAISGDQIEMVKFSSAVLVALNKPFINILDQVSEMQSLDCHKRITSRIEELMDRQILS
FAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKE
QIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKKKLPPRDSNNKVHGSEIVTGTVLL
TKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQHGPRPHPDEMAGSDLDGDEYSVIWDQE
LLLERNEEPFDFAVEKIKVPYDREKLDVLMREFYVTYLKLDSVGQISNSHLHNSDQYGLN
SRVCMDLAKKNCQAVDFTKSGQPPDPLETKWRADPVTFEVIPPENPERIPDFHMGNERSP
MYVSPRLCGKLFREFQAIDNVIKISEERDEQYNIELDETIFVTGFERYMESAQKQLSSYN
GQLRSIMENYGIRSEGEIMSGCIVEMRNRISDKDQDDMSFYNTNQMIETKMTSLVCKFRE
TFFEEFGGFTVKCTLLPNAYDNGNCLNYRCEDPDQEVRKKAVAWYRACYECAQSTREVRK
LSFAWIAYDVIAKVKETNVLNNERMQIGGANPMYTFLEEHRKQYLIDHDADFKNFCELDH
LITGEKSKEAISILKIYLEMIPGLDSVFFMLMRWGESLRLFDGKPIKIYHFFLMFILFAT
RQLASADGNAEPFFKIIEKEEYEKQKRDSSRGNIDPLTEKKRSDMMVKFFQFMGCRKFRK
MSTLSFCPLNFSSIFMRGEWRIFHESALKTYYNILFNLRFEELPVSSDPTITAETMDREC
EPFVIELPENINVNDLINNMKKHTNVSTVKMRRQEKNPINDKAKPKTTVRYIVSVSGTLE
SIQMLKKLSAVTIPIKSHWEGEEVSQQMASLCYQKVMNGEF
NT seq 4806 nt   +upstreamnt  +downstreamnt
atgtcggaacgaagtcatggattcattaaatttgaatttccggaattcgataactcgctt
caagtcatcgaaggaagtatcgatacaatgttactgacatttacttcagttcttcgtaaa
tacgaaatcgaaatcaaatcccgtcaagaaactcaaattgttgaagaacaggactgcgat
tgcttctttgaaataaactttgaagttgagagcgaacagtttgatcacacaattatagat
gctatgcacgattatttatcagatttgaatgtgtacgttccgtatcagcggcctaacatt
gtccttcatggttccgatttttggttgagaactctcgattgtcacacagagattccactt
gctgcgatttattttggaaatatacaaggaggcacatatttcaatcattggcaggtttca
ttttcacgcgaaaacatatcgtcaagagatatgttgcataagatacacgccgaatttgaa
ttcgataaaactgatatgataacagtacaatttcaatgtttcgaggagaagaaacagaag
tttgaggattcgaggaaacaaaaagttcgagtgaactatcaattaacaattcgaagggat
tcaattcgtcgaattattgtcgatccacgagttgaaggatgcaacacatgtgttcatttt
gaagttaattgtcccccactcatcaggaaaggatatattgataatgataagtcatcgttt
cataaacccttctatgagcgtcagaaacggttcgattgtgattggagaaatggaaatgtt
aatcatggtaatccacaagatgctgccatcgcagatagtcctttcttcacaattgagttc
cataaagaaatatcaacaaaagaaatgtatcgtgtgttgtctcgtctgaggtctcgaacc
aaagttctgattgaatttgcgaatcttccgagcattgatgttccgatgggcagtcactat
ccatacaaccggtggaatttgaagaaatcgccgaccgactcaaatgcgcccatttttaga
gagtttctgaaagagatattcccaccgaaatatgaaatagtagatgataaattgattgat
gttaatgaggaacggaagttttctatcacatatttgattgaatgtctgttgtcacgggga
gctattgtgaaagatcaactactactgaatgagcaacattggaaaaatttcctggaaatt
atcatttggtactacaggaatgataatcaactgtgtgaagctgccttggaagatctcgtt
catttaattgatggtagaaagcgaatcggatcaattttgaagtgcctagataaaatttgc
caaaaacgtgaggttatgaaactggttaatggtttaacagaaaaggagagcatagaagga
tatcaacgagttcgaaaagttatcttcacacctacgagagtcatctacattgcaccagag
acgatcatgggaaatcgagttctacggaaattcgataaagatggcacccgggtgcttaga
gtaacatttcgagatgataataataagaaaatgagatcaaatgttacgggtaaacttctc
gacaggacggcgaacaagtatttggagcacggagttcgaattgcaaatcgtgaatatggt
ttcttgggatgctcaaattcacaaatgagagacaatggagcatatttcatgatgagattc
acagacaagcagcttgatcgcttctacaaatgtaatccgacagcatcgaatataaacttc
aagccgaaaatcgacgaagttcgatttcaattaggaagattctcggaaattgaaaatgtt
cctaagttgatggcgagattgggtcaatgcttcactcagagcaggctaaccggtgtcgga
cttggacgagatgattactgtagcacgtacgatttgactggtggacgagcgacaaacgga
agcgagtatacattttctgacggagttggaatgatgagctatcaatttgcacaggaagta
tcccaagcgatgcaatttggaaaagctgttcctagctgcttccagattcgattccgcgga
aataaaggagtcatcgctattgaaccctttctggatgaaattcgtaaatgggcacttgtg
aacggtgttacttcgatgaaaatggcgaaatgtttgttccgtccaagtcaaattaaattc
caagctaaggctatttcgggagaccaaatcgaaatggtaaagttctcgtcagcggtattg
gttgctctcaataaaccattcatcaatattcttgatcaagtttccgaaatgcaatcgttg
gattgtcataaaagaattacgagcagaattgaggaattgatggatcgtcagatcttgtca
tttgccaaacagatgaatgaggagaccttttgtagaaacaaattaaaggagtttccacgt
cgtattgatattgataacttgagaacaatgtggggatttacattgtctagtgagccattc
ttccgttccctaatcaaggcatccatcaagttctcaatcacgaaacagctttgcaaagag
caaattcaaattcccagtgaacttggtcgatctatgctcggagtagttgatgaaactgga
cgtttacaatacggacaaatcttcgttcaatacacgaaaaattacaagaaaaaacttcca
ccgcgagattccaacaataaagttcatggaagtgagattgtcacaggaaccgttttgctc
actaaaaacccttgtattgtccccggagatgttcggattttcgaggctgtcgatattcca
gaacttcatcacatgtgtgatgtagtagtattcccacaacatggaccgaggcctcatcct
gatgaaatggctggatccgatttggatggagatgaatattctgttatttgggatcaggaa
ttacttcttgaaagaaatgaagaacctttcgattttgctgttgaaaagattaaagtacca
tatgatagagagaagcttgacgtcttgatgcgtgagttttatgtcacatatctgaaatta
gactccgttggacaaatctcgaacagtcatcttcacaattctgaccaatatgggctgaat
tcgagagtttgtatggatttggcaaagaagaattgccaagctgttgatttcacaaagtct
ggacaaccaccagatccattggaaacgaaatggagggccgatcccgtaacattcgaagtt
atccctcctgaaaatcctgagcgaattcctgactttcatatgggaaatgaacgaagtccg
atgtatgtcagtccaaggctttgtggaaaactattccgagagtttcaagcaattgacaat
gttatcaagatctctgaagaaagggatgaacaatataatattgaactggatgagactatc
tttgttactggttttgagagatatatggaaagtgctcaaaaacaattatccagttacaac
ggacaactcaggtctattatggaaaactacggtatccggtcggaaggtgaaatcatgtca
ggatgcattgtcgaaatgagaaatcgaatttcggataaagaccaagatgatatgtcattc
tacaacactaatcaaatgattgaaacaaaaatgacatctttagtgtgcaaattcagagaa
acgttcttcgaggaatttggtggattcacagtaaaatgtacacttttaccaaatgcttac
gataacggcaactgtctcaattaccgttgcgaagatccagatcaggaggtcagaaagaaa
gctgttgcctggtatcgagcttgttacgagtgtgctcaatccacgagagaagttcggaag
ctttcatttgcttggattgcatatgacgtcattgccaaagtcaaggagactaatgtattg
aataacgaaagaatgcagattggtggagcaaatcccatgtacactttcctagaagagcat
cgaaaacaatatttgattgatcacgatgcggatttcaagaacttctgtgaactcgatcat
ctaattaccggtgaaaaatcaaaagaagcgatttccattctgaaaatatatctggagatg
ataccagggttggactctgtgttcttcatgttaatgcgatggggagaatcattacgattg
tttgatggaaaaccaatcaagatttatcactttttcctcatgttcattctttttgcaaca
cgacaattggcatctgctgatggaaatgcagaaccgtttttcaaaataattgaaaaagaa
gaatatgagaaacagaaaagagattcatcgagaggcaatatcgatccacttactgaaaaa
aaaagatcagatatgatggtcaaattcttccaatttatgggatgtcggaagttcagaaaa
atgtcgactttatccttttgtcctctcaacttctcatcgatttttatgcgtggagaatgg
cgaatattccatgaatcagctctcaaaacctactacaatattctgtttaatctacgtttt
gaagagcttccagtatcatctgatccaacaattacagctgagacgatggatcgagagtgt
gaaccatttgttatcgagttacccgaaaatataaatgtgaatgatctgatcaataatatg
aagaaacacacaaatgtttcaactgtaaagatgcggcgacaggagaaaaatccgataaac
gataaggcgaaaccaaagactacagttcgttacatcgtctccgtctccggaactctcgaa
tcaattcaaatgctcaaaaagctttcagcagttacaattccaatcaaaagtcattgggaa
ggagaagaagtatcacaacagatggcatctctttgctatcaaaaagttatgaatggtgaa
ttttaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

Download RDF
DBGET integrated database retrieval system