KEGG   Caenorhabditis elegans (nematode): CELE_K02F3.11
Entry
CELE_K02F3.11     CDS       T00019                                 
Symbol
rnp-5
Name
(RefSeq) RRM domain-containing protein
  KO
K14325  RNA-binding protein with serine-rich domain 1
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
cel03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_K02F3.11 (rnp-5)
   03015 mRNA surveillance pathway
    CELE_K02F3.11 (rnp-5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_K02F3.11 (rnp-5)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CELE_K02F3.11 (rnp-5)
SSDB
Motif
Pfam: RRM_1 DUF2457
Other DBs
NCBI-GeneID: 175244
NCBI-ProteinID: NP_001370330
WormBase: WBGene00004388
Ensembl: WBGene00004388
Position
III:complement(852801..853909)
AA seq 289 aa
MVEKEETKKRARSSSSSSSSSSGSSSSGSSSSGSRSSSSSSSGRSRSRSPRRRDTRPPAR
GGRSRSPIRRGSPPRGARADRDRPMRPSPSPPRRRRPSPSPPRRDRRDRSGSRQRRRASP
RRSPAARSASPAKRVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYV
EYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQSVPFQRRSSPFRRRSPPPRDRMSPMR
RGGRSPPPHRRRSPMGGRGSGANNMPLGGPNRFRRASRSRSPAGRRSRS
NT seq 870 nt   +upstreamnt  +downstreamnt
atggttgagaaagaagaaaccaaaaagagggctcgctcgtcttcaagcagctcgtccagt
agctctggatcgtcatcttctggaagtagttcatcaggatctcgctcctccagctcatcg
tccagtggccgttctcgttctcgctcaccacgtcgtcgtgatacccgcccaccagctcgt
ggaggacgctctcgttctccaatccgtcgtggttcaccgccaagaggagcacgcgcggat
cgcgatcgcccaatgcgaccatcaccatcaccaccacgtcgccgtcgtccatccccatcg
ccaccacgtcgtgatcgtcgtgacagaagcgggagccgtcagaggagacgcgcttctccg
aggagaagcccagcagcaagatcagccagtccggccaagcgtgtagtgatcaaaaatttg
agcagaaatgttctgaaaacgcacctcgaggagattttctcgatctacggagccatcaag
aatgtcgatcttccaccagatcgcttccataaccatgttcatcgtggatatggatacgtt
gaatatgacaatttggaagacgccgaaaagtcgatcaagcacatggatggaggacaaatc
gatggaatggctgttcacgtcgaaatgactatcggacgacaatctgtcccattccagcgt
agaagttctccatttagaagacgctcgccgccaccaagagacagaatgtcaccaatgaga
agaggaggccgcagtccaccaccacatcgcagacgttctccaatgggcggccgtggctca
ggagccaacaatatgccacttggagggcccaacagattccgccgtgccagccgctctcgt
tctccagccggcagaagatcgcgttcttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (149)   
   KEGG ORTHOLOGY (1)   
   RefGene (143)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (158)   

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