KEGG   Caenorhabditis elegans (nematode): CELE_M03F8.3
Entry
CELE_M03F8.3      CDS       T00019                                 
Symbol
syf-3
Name
(RefSeq) TPR_REGION domain-containing protein
  KO
K12869  crooked neck
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_M03F8.3 (syf-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cel03041]
    CELE_M03F8.3 (syf-3)
   03036 Chromosome and associated proteins [BR:cel03036]
    CELE_M03F8.3 (syf-3)
Spliceosome [BR:cel03041]
 Complex B
  Other components
   Prp19-related factors
    CELE_M03F8.3 (syf-3)
 Complex C
    CELE_M03F8.3 (syf-3)
Chromosome and associated proteins [BR:cel03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Other centrosome duplication proteins
     CELE_M03F8.3 (syf-3)
SSDB
Motif
Pfam: HAT TPR_14 Suf TPR_19 TPR_16 TPR_12 TPR_17 SNAP TPR_9 Mad3_BUB1_I RAB3GAP2_C U3_assoc_6
Other DBs
NCBI-GeneID: 178979
NCBI-ProteinID: NP_001122979
WormBase: WBGene00019762
Ensembl: WBGene00019762
UniProt: A9D4S6
Position
V:5940022..5943366
AA seq 747 aa
MSDDEAAVPGNKPIRLPKKAAKVKNKAPAQLQITAEQLLREAKERELELIPPAPKTKITD
PDELKEYQRKKRKEFEDGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSI
SIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERW
IEWEPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNA
RAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHY
TQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVY
ERAIANIPPHSYFQEKRYWRRYIYLWINYALYEELVAKDFDRARQVYKACIDIIPHKTFT
FAKVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDKLFRAYIDLELQLREFDRCRKLYEK
FLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEE
HEKARDLYETLLQRTNHIKVWISMAEFEQTIGNFEGARKAFERANQSLENAEKEERLMLL
EAWKECETKSGDQEALKRVETMMPRRVKKRRQIQTEDGVDAGWEEYFDYIFPQDQAAKGS
FKLLEAAARWKREREEAAARAAQELDAPIPEGDDDEEKEEAGKDAEEKVREGDSDTDLSE
SSSSSDSESSSSSSSDSSDSSDDDEDK
NT seq 2244 nt   +upstreamnt  +downstreamnt
atgagtgatgacgaagccgcagttccaggcaataagccaattcggctcccaaaaaaggct
gcgaaagtgaaaaataaggcaccagctcaacttcaaatcacagccgaacaattgctccga
gaagcgaaagaacgagagcttgaactcattccacccgcaccaaaaacaaaaatcaccgat
ccagatgaattgaaagaatatcagcgaaaaaagaggaaggagttcgaagatggaattcgt
aaaaatcgtatgcaacttgccaattggattaagtatggaaaatgggaagaatcgattgga
gagattcaacgagctcgatcagttttcgaaagagctttggacgttgatcatcgttcaatc
agtatttggctgcagtacgctgaaatggagatgcgatgcaaacaaatcaatcacgcgaga
aacgtgttcgatagagcaatcaccattatgccacgtgccatgcaattctggttaaaatac
tcctacatggaggaagtgattgagaacattcccggagccagacaaatctttgagcgatgg
attgagtgggaaccaccagagcaggcttggcagacttatatcaactttgagcttcgctat
aaggagattgatcgtgctcgttctgtgtatcagaggtttttacatgttcacggaattaat
gtacaaaactggatcaaatacgccaagtttgaagaacgaaatggatatattggtaatgct
agagcagcgtacgagaaagctatggaatactttggagaagaagatatcaatgagacggtg
ctggttgcttttgctctttttgaagagcgtcagaaagaacacgaaagagcacgtggaatc
ttcaaatacggattagacaatcttccatcgaaccgaaccgaagaaattttcaagcactac
acgcaacacgagaagaagtttggagaacgagtgggaattgaagatgtaattatcagtaaa
agaaagacacagtacgagaaaatggttgaagagaatggatacaattatgatgcatggttc
gattatttacgattgttggagaatgaggaaactgatcgagaagaagttgaagatgtctac
gagagagcaattgctaatattccgcctcattcctactttcaggaaaaacgctattggcgt
cggtacatttacctctggatcaactacgctttgtatgaagaactcgttgcaaaagatttt
gatagagctcgtcaggtctacaaagcatgtattgatatcattccacacaaaactttcaca
tttgcaaaagtctggatcatgtttgcgcattttgaaattcgacagctggatcttaacgct
gcaagaaagattatgggtgttgctattggaaagtgccccaaggacaagctgttccgtgcg
tacatcgatttggagctgcaacttcgtgaattcgatcggtgtcggaaactctacgagaag
tttttagaaagttctccagaaagttctcaaacttggatcaaattcgccgagcttgaaact
ctccttggtgatactgaccgttctcgtgctgttttcacaattgccgtacaacaaccggct
cttgatatgcctgaacttctttggaaagcctatattgactttgaaattgcttgtgaggaa
cacgaaaaggctagagatctctatgaaaccctactccaacgaacaaatcacattaaagtc
tggatttcgatggctgaatttgaacaaaccattggaaactttgaaggggcgcgtaaggcg
tttgaaagagctaatcaatcattggagaatgccgagaaagaggaacgattgatgttactg
gaagcatggaaagaatgtgaaacgaagagcggtgatcaagaagcgttaaagagagttgaa
actatgatgcctcgtagagtcaaaaaacgacgtcaaatacaaactgaagatggtgtcgat
gcaggatgggaggaatactttgactacatattcccacaagatcaagcagcaaaaggcagt
ttcaaacttctcgaagcagccgccagatggaagagggaaagagaagaagctgcagcacga
gcagctcaggaacttgatgctcctattccagaaggagatgatgatgaagaaaaagaggaa
gctgggaaagatgctgaagaaaaagtacgagaaggcgatagcgatacggatttatcggaa
agcagtagtagcagcgatagtgaatcatcatcatcatcatcatctgactcttctgattcc
tctgatgatgacgaagacaagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (12)   
   Pfam (12)   
All databases (47)   

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