KEGG   Caenorhabditis elegans (nematode): CELE_T04C12.6
Entry
CELE_T04C12.6     CDS       T00019                                 
Symbol
act-1
Name
(RefSeq) Actin-1
  KO
K05692  actin beta/gamma 1
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03082  ATP-dependent chromatin remodeling
cel04145  Phagosome
cel04814  Motor proteins
cel04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CELE_T04C12.6 (act-1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    CELE_T04C12.6 (act-1)
  09142 Cell motility
   04814 Motor proteins
    CELE_T04C12.6 (act-1)
   04820 Cytoskeleton in muscle cells
    CELE_T04C12.6 (act-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_T04C12.6 (act-1)
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_T04C12.6 (act-1)
   03036 Chromosome and associated proteins [BR:cel03036]
    CELE_T04C12.6 (act-1)
   03029 Mitochondrial biogenesis [BR:cel03029]
    CELE_T04C12.6 (act-1)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:cel04812]
    CELE_T04C12.6 (act-1)
   04147 Exosome [BR:cel04147]
    CELE_T04C12.6 (act-1)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     CELE_T04C12.6 (act-1)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Factors that have mRNA localization signals
     CELE_T04C12.6 (act-1)
Chromosome and associated proteins [BR:cel03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TIP60 complex
     CELE_T04C12.6 (act-1)
    NuA4 complex
     CELE_T04C12.6 (act-1)
  Chromatin remodeling factors
   BAF complex
    CELE_T04C12.6 (act-1)
   PBAF complex
    CELE_T04C12.6 (act-1)
   GBAF(ncBAF) complex
    CELE_T04C12.6 (act-1)
   SWR1 complex
    CELE_T04C12.6 (act-1)
Mitochondrial biogenesis [BR:cel03029]
 Mitochondrial quality control factors
  Mitochondrial dynamics
   Actin cytoskeleton organization
    CELE_T04C12.6 (act-1)
Cytoskeleton proteins [BR:cel04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actins
    Actins
     CELE_T04C12.6 (act-1)
Exosome [BR:cel04147]
 Exosomal proteins
  Proteins found in most exosomes
   CELE_T04C12.6 (act-1)
SSDB
Motif
Pfam: Actin
Other DBs
NCBI-GeneID: 179535
NCBI-ProteinID: NP_505819
WormBase: WBGene00000063
Ensembl: WBGene00000065
UniProt: P0DM41 P0DM42
Structure
Position
V:11081052..11082415
AA seq 376 aa
MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
TQIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLD
LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKS
YELPDGQVITVGNERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVL
SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK
QEYDESGPSIVHRKCF
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgtgtgacgacgaggttgccgctcttgttgtagacaatggatccggaatgtgcaaggcc
ggattcgccggagacgacgctccacgcgccgtgttcccatccattgtcggaagaccacgt
catcaaggagtcatggtcggtatgggacagaaggactcgtacgtcggagacgaggcccaa
tccaagagaggtatccttaccctcaagtacccaattgagcacggtatcgtcaccaactgg
gatgatatggagaagatctggcatcacaccttctacaatgagcttcgtgttgccccagaa
gagcacccagtcctcctcactgaagccccactcaatccaaaggctaaccgtgaaaagatg
acccaaatcatgttcgagaccttcaacaccccagccatgtatgtcgccatccaagctgtc
ctctccctctacgcttccggacgtaccaccggagtcgtcctcgactctggagatggtgtc
acccacaccgtcccaatctacgaaggatatgccctcccacacgccatcctccgtcttgac
ttggctggacgtgatcttactgattacctcatgaagatccttaccgagcgtggttactct
ttcaccaccaccgctgagcgtgaaatcgtccgtgacatcaaggagaagctctgctacgtc
gccctcgacttcgagcaagaaatggccaccgccgcttcttcctcttccctcgagaagtcc
tacgaacttcctgacggacaagtcatcaccgtcggaaacgaacgtttccgttgcccagag
gctatgttccagccatccttcttgggtatggagtccgccggaatccacgagacttcttac
aactccatcatgaagtgcgacattgatatccgtaaggacttgtacgccaacactgttctt
tccggaggaaccaccatgtacccaggaattgctgatcgtatgcagaaggaaatcaccgct
cttgccccatcaaccatgaagatcaagatcatcgccccaccagagcgcaagtactccgtc
tggatcggaggatctatcctcgcttccctctccaccttccaacagatgtggatctccaag
caagaatacgacgagtccggcccatccatcgttcaccgcaagtgcttctaa

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Ontology (7)   
   KEGG BRITE (7)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (1023)   
   KEGG ORTHOLOGY (1)   
   RefGene (1017)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (1)   
   Pfam (1)   
All databases (1043)   

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