KEGG   Caenorhabditis elegans (nematode): CELE_T10G3.6
Entry
CELE_T10G3.6      CDS       T00019                                 
Symbol
gut-2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03018  RNA degradation
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_T10G3.6 (gut-2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CELE_T10G3.6 (gut-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_T10G3.6 (gut-2)
   03041 Spliceosome [BR:cel03041]
    CELE_T10G3.6 (gut-2)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     CELE_T10G3.6 (gut-2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     CELE_T10G3.6 (gut-2)
Spliceosome [BR:cel03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    CELE_T10G3.6 (gut-2)
 Complex C
  U2 snRNP components
    CELE_T10G3.6 (gut-2)
SSDB
Motif
Pfam: LSM DYW_deaminase SM-ATX
Other DBs
NCBI-GeneID: 179833
NCBI-ProteinID: NP_001256511
WormBase: WBGene00001808
Ensembl: WBGene00001808
UniProt: P92022
Position
V:<13497690..>13498819
AA seq 97 aa
MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC
FIRGSVVRYVQLPSDQVDTQLLADSCRKELLDSKAKQ
NT seq 294 nt   +upstreamnt  +downstreamnt
atgctgttcttctcattcttcaaatcactcgtaggaaaggacgttgtcgtggagctcaaa
aatgatttgagtatctgcggaactctgcactcggtcgatcagtatctcaacatgaagttg
accgatatcaccgtctccgatccagaacgatttccacatatggtctctgtcaaaaactgc
ttcatccgcggatccgtcgtcaggtacgtgcaactcccatccgatcaagtcgacacacaa
ctcttggctgactcctgccggaaggagcttctcgattcaaaggcaaaacagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (25)   

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