KEGG   Caenorhabditis elegans (nematode): CELE_Y32H12A.2
Entry
CELE_Y32H12A.2    CDS       T00019                                 
Symbol
thoc-5
Name
(RefSeq) THO complex subunit 5
  KO
K13174  THO complex subunit 5
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    CELE_Y32H12A.2 (thoc-5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_Y32H12A.2 (thoc-5)
   03041 Spliceosome [BR:cel03041]
    CELE_Y32H12A.2 (thoc-5)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CELE_Y32H12A.2 (thoc-5)
Spliceosome [BR:cel03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CELE_Y32H12A.2 (thoc-5)
SSDB
Motif
Pfam: FmiP_Thoc5 Band_7_1
Other DBs
NCBI-GeneID: 175735
NCBI-ProteinID: NP_001254926
WormBase: WBGene00021311
Ensembl: WBGene00021311
UniProt: H2L0N5
Position
III:complement(5345931..5349401)
AA seq 597 aa
MSVNVRPVKRFVEEQKKKNPEIKLSEKATQLLTDMPKMDSPEKLFNLEDKIATEMGSDRI
FEEFLQDYAFLRNAVEEYLDGKPTSSDTISKIARLRRNTRLTHYGTALMRKEVAERMENV
DAKLLQLQNVTSEVQHIQKEIDRCLDFSAGDEELELVPFEQFHTEASEILANETADNEHE
QYLARLKFENEQRRELLSTLNELEGRRNVLQSDIRGKEVRLQGLKPKLEDLTKVAEPVFE
MVGAKFKDLSIEGEQRKLSLQLPAPLAVAHIHAAAYKEIHDDKLFEFRILGTNDTEKQSK
DETEAMKRKRKEDETTQEKINKMASELLEVHPMSLEFEIECSENIKISMQIQYLTELKVT
TAKWHINTDSKLKKSPFFSIDSLMSDLFENDTGDKCPNDVGEMKIEHLKMNFNSSAKQIG
KPFKFIQEISGSEGETDRIGATEHLRKVITTIRTRISNRAVLDGIIRDLESKKTDDLNLE
PEVKINSFKICDDESFIASIPTSLTKKISNSAATDRFSYKIEASDGNGRKLTAYISIPAD
YPRHTALFGIAAPEDSESSTEVARQIEDRLNTEAHYVDDVKSIKEQLSLLLKHIDLS
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgtctgtaaacgttcgcccggtgaagcgatttgttgaagaacagaaaaagaaaaatccg
gaaattaaattatctgaaaaagccacacaactcctgactgatatgccgaaaatggacagc
cctgagaaactgttcaatctggaagacaaaattgcaacggaaatgggtagcgatcgaatt
ttcgaagaatttctccaagattacgcatttttgagaaatgctgttgaagaatacttggat
ggaaagccaacatcctcggatactatctcgaaaatcgcgcgtttacgccgaaatacacga
cttacccactatggaactgccctaatgcgaaaagaggtggccgagaggatggagaacgtt
gatgcgaagcttctacagttacagaatgttactagcgaggtgcaacacattcaaaaagaa
atcgatcgttgtttggactttagcgccggtgatgaggagcttgagttggtccctttcgag
caatttcacactgaagcgtcggagattcttgcaaatgagacggctgataacgagcacgaa
caatatttggcaagattgaagttcgagaatgagcagagacgagaacttctctctacactc
aacgagctcgagggtcgtcgaaacgtactgcaaagcgacatacgtggaaaagaagttcgt
cttcaaggtcttaaaccaaaacttgaagatctcacaaaagttgcggagcccgtcttcgaa
atggttggcgccaaattcaaagatttatcgattgaaggggagcagcgaaagctctcattg
caattgccggctccacttgctgttgcacatatacatgctgctgcttataaggaaattcat
gatgacaagctcttcgaattccgaattcttggcacaaacgacacagaaaaacaatcgaaa
gatgaaacagaagccatgaaaagaaaacgaaaagaagatgaaacaactcaagaaaaaatt
aataaaatggcttcagaactgcttgaagttcatccaatgagcctggaatttgagattgaa
tgctctgaaaatattaaaatttcaatgcaaattcagtatctgacagaacttaaagtgaca
actgcgaaatggcatataaatacggactcaaagctcaaaaaatcaccgtttttctcgatt
gactcactgatgtcagatttattcgaaaatgatacgggagacaagtgtccaaatgatgtt
ggagaaatgaagattgaacatttgaaaatgaacttcaactcaagtgcaaaacaaatcgga
aaaccgttcaaatttattcaagaaatcagtggatccgaaggcgaaactgatcgaattgga
gcaacagagcatttgagaaaagtgatcacaacgattagaacgagaatatccaatcgtgca
gtacttgatggaattattcgagatttggaatctaagaaaactgacgatttgaatttggaa
ccagaagtgaaaattaattccttcaagatttgtgatgatgaatcttttattgcttcaatt
ccaacaagccttacgaagaaaatttcaaattccgcagcaaccgacagattttcatataaa
attgaggcttccgatggaaatggcagaaaactcactgcttatatctcaattcccgccgac
tatccacgacacactgcactttttggaattgctgctccagaagattccgaatcaagtaca
gaagttgccagacaaattgaggatcgtctgaacactgaagctcactatgttgatgatgtg
aagagtattaaagaacaacttagcctgcttcttaagcatatcgatctttcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (29)   

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