KEGG   Caenorhabditis elegans (nematode): CELE_F36A4.7
Entry
CELE_F36A4.7      CDS       T00019                                 
Symbol
ama-1
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_F36A4.7 (ama-1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_F36A4.7 (ama-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_F36A4.7 (ama-1)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_F36A4.7 (ama-1)
Enzymes [BR:cel01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CELE_F36A4.7 (ama-1)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CELE_F36A4.7 (ama-1)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_F36A4.7 (ama-1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 177190
NCBI-ProteinID: NP_500523
WormBase: WBGene00000123
Ensembl: WBGene00000123
UniProt: P16356
Position
IV:4248070..4258169
AA seq 1856 aa
MALVGVDFQAPLRIVSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVI
DRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPR
VLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDGKKVAGGCGRY
QPSYRRVGIDINAEWKKNVNEDTQERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPE
WMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDD
VRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTV
ITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGAKYIIRENGAR
VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL
SVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVR
MMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTH
STHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAA
NFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLE
PTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNM
PTMKPNNAVFERDFRMDLTDNKFLRKNYSEDVVREIQESEDGISLVESEWSQLEEDRRLL
RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGN
DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA
AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLSR
TSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGEDK
GEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKKRIIITPEGGF
KSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISF
DGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEE
DPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGSFAGSPSNRE
FSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSPAGNTDGGASPFNEGGWSPASPGDP
LGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYS
PTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPS
YSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSS
PQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTYDPNS
NT seq 5571 nt   +upstreamnt  +downstreamnt
atggctctcgtcggtgtcgacttccaagcgccgctgcgcattgtctcacgcgttcagttt
ggaattctcggcccggaggagattaaacgcatgtcagtggctcatgtcgagtttccagaa
gtctacgagaacggaaagccaaagttgggcggtctcatggatccaagacaaggagtcata
gatcgtcgtggaagatgcatgacatgcgctggaaatttgacagattgcccgggacatttc
ggtcatttggagctcgccaaacccgtatttcacattggattcctcacaaaaacgctgaaa
atactgcgttgcgtatgcttctactgcggacggcttctcatcgacaaatccgctcctcga
gtgctggaaattctgaaaaagactggcacaaactcgaaaaagcggctcacaatgatctac
gatctgtgcaaagccaagtcggtgtgcgaaggagcagcggagaaggaagaaggaatgcca
gatgacccggatgatccgatgaatgatggaaagaaggtcgcaggtggatgcggtcgctat
caaccatcataccgccgtgtcggcatcgacatcaacgcagaatggaagaagaacgtgaat
gaggacacgcaggagcgaaaaatcatgctgaccgccgaacgagtactcgaagtcttccaa
cagatcacagacgaagatattctcgtaataggaatggatccacaattcgctcggcctgaa
tggatgatttgtaccgtacttccagtcccaccacttgcagttcgtccagcagtcgtcaca
tttggatcggcaaagaatcaggacgatttgacccacaaactttcggatattatcaaaacc
aatcagcagttgcagagaaatgaggctaacggagccgcagcccatgtgctcaccgatgac
gtcaggcttttgcagttccacgtggcaactcttgtggacaattgtattccgggcctgccg
acggctacacagaagggtggacgaccgctgaaatcgatcaagcagcgactgaaaggaaaa
gaaggacgcattcgtggaaatttgatgggaaaacgtgtggatttctctgcgcgtaccgtc
atcacagccgatccgaacctgccgattgatacggtcggtgtgccgagaactattgcgcag
aatcttacgttcccggaaattgtgacaccttttaatgtggataagctgcaggagttggtc
aatcgtggtgatacacagtatcctggtgccaagtatattattagagaaaacggagctcga
gtggatcttcgctaccatccgcgtgccgccgatcttcacctccaaccgggataccgtgtc
gaacgtcacatgaaagatggcgatataatcgtctttaatcgtcaaccgactctccacaaa
atgtcaatgatgggacatcgtgtcaaaatcctcccatggagtacattccgaatgaatttg
tctgtcacatcaccgtacaatgcggatttcgatggagatgagatgaatcttcatttgcca
caaagtttggagacccgagccgagattgaggagatcgctatggtgccgagacaactcatc
actccacaagccaacaaaccagtcatgggtatcgtccaggatactctctgcgccgtccgt
atgatgacaaaacgtgacgtcttcattgactggccatttatgatggatctccttatgtat
ctaccaacttgggacggaaaagtcccccaaccagcaatcctgaagcccaaaccactttgg
accggaaaacaagtcttctcgcttatcattcctggaaatgtcaatgttctgagaacccac
agtacccatccagactctgaagattctggaccatacaaatggatttcccctggagatacc
aaagttatcatcgaacacggagagcttctatcgggaattgtgtgctccaaaactgtcgga
aaatcggctggtaacctgctccacgtcgtcacccttgagctcggatacgaaattgccgcc
aacttttattcgcacattcaaacggtcatcaatgcatggctcatacgagaaggtcacaca
atcggaatcggtgatacgattgccgatcaggcgacctatttggatattcagaatactatc
agaaaagccaaacaggatgtggtggatgtaattgagaaggctcacaatgatgatttggag
ccaacgcccggaaacacgttgagacagacttttgagaataaagtcaatcagattttgaac
gacgctcgtgatcgaacgggtagttctgcgcagaagagtttgtctgaattcaacaatttc
aagtcgatggtggtgtcaggatcgaagggatcgaagattaatatctcgcaggttatcgcg
tgtgtcggacaacaaaacgtcgaaggaaagcgtattccattcggtttccgtcatcgtaca
cttcctcacttcatcaaggacgactatggaccggaatccaaaggttttgtcgaaaattcc
tatctggccggcctaactccatcggaattcttcttccacgcaatgggaggacgtgaaggt
ctgattgatacagctgtaaagactgccgagactggatatattcaacgtcgtctaatcaag
gctatggaaagtgtaatggttaattatgatggaactgtgcgaaattcccttgcacaaatg
gttcaattgagatatggagaagatggtttggatggaatgtgggttgagaatcagaatatg
ccgacgatgaagcccaataatgccgtgtttgagagagatttcagaatggacctcaccgac
aacaaattccttcgcaaaaactactcggaagacgttgtgcgcgaaattcaagaatccgaa
gacggaatttcgctcgtcgaatcggaatggtcacagctggaagaggatcgtcgtctcctt
cgaaagatctttccacgtggtgacgctaagatcgtgcttccgtgtaatctgcagcgtctc
atttggaatgctcagaaaatattcaaagttgatctgcgcaagccggtgaatctctcgccg
ttgcacgtgatctccggagtccgtgagctttcgaaaaagctgatcattgtcagtggaaac
gacgagatttcaaagcaggctcagtacaatgcgacacttttgatgaatatcttgctccgt
tcgacactttgcaccaagaacatgtgcacaaaatcaaaactgaactctgaagcgttcgat
tggctcctcggagaaattgaatcgcgattccaacaggctattgctcaaccgggagagatg
gttggagcattggcggctcaatcgctcggagagccagctactcagatgacactcaacacg
ttccattatgcaggagtttcggcgaagaatgtgacacttggagtgccgagattgaaggag
attatcaatgtttcgaagacgttgaagactccgtcgttgactgtattcttgacgggagcg
gctgccaaggatccggaaaaggcgaaggatgtgttgtgcaagttggagcataccacgttg
aaaaaggtaacatgcaatacagcgatctactacgatcctgacccaaagaacacggtgatc
gccgaagacgaggaatgggtatcgattttctacgagatgccggatcacgatctatcgcgt
acctctccatggcttcttcggatcgaattggaccgaaaacgaatggtcgacaagaagttg
acgatggaaatgattgccgatcggattcacggaggcttcggcaacgatgttcacactatc
tacaccgacgataacgccgagaagctcgttttccgtctccgaatcgccggagaggataag
ggagaagctcaggaggagcaggtggataagatggaggacgacgtgttcctacgatgtatc
gaggcaaatatgttgtcagatttgacgcttcagggaatcccggcgatctcgaaggtctac
atgaatcagccgaatactgatgataagaagcgtatcattattacaccggagggagggttc
aagtcggtcgccgactggatccttgaaactgatggtaccgcgttgctccgtgtgctctcc
gaacgtcagattgatccggttcgaacgacatccaacgatatctgcgagatctttgaagtg
ctcggaatcgaggcggtcagaaaggctatcgagcgagaaatggacaatgtcatctcgttc
gacggatcctatgtcaattaccgacatttggcactgctttgtgatgtgatgactgcgaag
ggacacttgatggctattacgagacatggaatcaatcgtcaggaggttggagccctgatg
cgttgttcattcgaagaaacggtggatattttgatggaggcagccgtgcatgctgaggag
gatcctgtcaagggagtgtcggagaatattatgctcggacagctcgctcgttgtggtacc
ggatgctttgatttagtattggacgttgaaaagtgcaagtatggaatggaaatcccgcag
aatgttgtaatgggcggcgggttctatggaagctttgccggctcgccgagcaatcgcgag
ttctcgccggctcattcgccgtggaactctggagtcacaccgacgtatgctggagccgcc
tggtcgcctaccacaggtggaatgtcgcctggtgctggattttcaccggctggaaatacg
gatggaggagcatcgccgttcaatgaaggaggatggtctccggcatcgcctggggatcca
ctgggagcattgtctccgcgtactccgtcgtatggaggaatgtcacctggagtctactct
ccatcgtctccgcagttctcgatgacttcaccacactattcaccgacgtctcccagttat
tcgccaacttccccagccgctggacaatcgccagtgtcgccgagctactcgcctacctcg
ccgagctattctccgacttctcccagctattctccgacatcaccgagctactcgccaact
tctccgagctactcgccgacgtcgccgagctattctccaacatcgccaagttattcgccg
tcgtcgccaagctatagcccttcgtcgccgagctactcgccttcaagcccgagatattcg
ccaacgtcgccgacgtacagtccgacgagtccaacgtactctccaacatctccaacgtac
tcgccgacgtcgccaacatattctccaacatctccaagttatgaaagtggaggtggatac
agcccatcgagccccaagtactcgccgtcgtcgcctacctattcgcctacgtcgccgagc
tactcgccaacatcaccacagtactcgccgacgagtccgcagtacagtccgagctcgccg
acgtacactccatcctcgccgacatacaatccaacatctccacgcggattctcgtcgcca
cagtactctccgacgtcgcctacctattcgcctacgtcgcctagctacacgccgtcgtcg
ccgcagtactcgccgacgtcgcctacctacactccaagtccatcggagcagccaggaact
tcggctcagtactctccaacatcgccaacgtactctccgtcgtctccaacgtattcgcca
gcttcaccatcatacagtccaagctcgccgacttatgatccaaattcataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (139)   
   KEGG ORTHOLOGY (1)   
   RefGene (133)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (159)   

Download RDF
DBGET integrated database retrieval system