KEGG   Caenorhabditis elegans (nematode): CELE_W08D2.7
Entry
CELE_W08D2.7      CDS       T00019                                 
Symbol
mtr-4
Name
(RefSeq) mRNA transport homolog 4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CELE_W08D2.7 (mtr-4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_W08D2.7 (mtr-4)
   03041 Spliceosome [BR:cel03041]
    CELE_W08D2.7 (mtr-4)
   03009 Ribosome biogenesis [BR:cel03009]
    CELE_W08D2.7 (mtr-4)
   03016 Transfer RNA biogenesis [BR:cel03016]
    CELE_W08D2.7 (mtr-4)
Enzymes [BR:cel01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CELE_W08D2.7 (mtr-4)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     CELE_W08D2.7 (mtr-4)
Spliceosome [BR:cel03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    CELE_W08D2.7 (mtr-4)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    CELE_W08D2.7 (mtr-4)
Ribosome biogenesis [BR:cel03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    CELE_W08D2.7 (mtr-4)
Transfer RNA biogenesis [BR:cel03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    CELE_W08D2.7 (mtr-4)
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C ResIII nSTAND3 Helicase_dom4_arc
Other DBs
NCBI-GeneID: 177824
NCBI-ProteinID: NP_501757
WormBase: WBGene00012342
Ensembl: WBGene00012342
UniProt: Q23223
Position
IV:9825694..9830620
AA seq 1026 aa
MADLFDEFIEPGVKNEIMDVEEAPENPMEKLDSAKKRQAREDMTNLLANMHNDVGVGNFD
EATSKRARVEEEEEVEEARMENIIVHTIRTDNENCTHEVAIPPNAEFAELRENSGTEPAK
YYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKAL
SNQKYRELEEEFKDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEI
HYMRDKERGVVWEETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPT
PLQHWIYPVGGEGMYEVVNVKGEFREDKFRDAMSGLATAGDSAGSFNKRRTGGGTQGDSN
VLKIIRSVASNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSP
EDQKLPQILNILPLLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPA
RTVVFTSARKFDGSDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIK
GATDPLNSQFRLTYNMVLNLMRVEGMAVSWIINNSFHQFQSYAKIPEIDKKCVQVERKIA
SFNFPWENEMRTLVDLQDQLEATRQRIIQIQREPKYIVGFLHAGRLFKVKSGDRDFKWGI
LNQFKKEQNPDDRNDQIYLCDMMIAINTEGRFDPTNPATLVPGFDLPKRRWIRVPMTIDR
ITAISAVRLKVPADIDKPDGQMRLDGMMAAATKRFGNQIPLLDPIQDMEIKTVEMKELIA
REKSLEGRLETHSMTKRDNMKDLKKQFEQKQDAVKELNALKAERKSVQSTLHLEELNNRK
RVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVAQTAALLSCFVFQ
DKCAAPKLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYVSSFNPGLMDVVYQWVNG
ATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVF
AASLYL
NT seq 3081 nt   +upstreamnt  +downstreamnt
atggccgatcttttcgacgaattcatcgaacccggtgtaaaaaatgagatcatggacgta
gaggaagcaccggaaaatcctatggaaaagctcgattctgcaaaaaaacgtcaagcacga
gaggatatgacaaacttactggcaaacatgcacaatgatgtcggagttggaaattttgat
gaagcaacatcaaaacgcgctcgtgtcgaagaggaagaggaggtcgaagaagcaagaatg
gaaaatataattgtccatacaatccgaacagataatgagaattgtactcatgaagtggca
ataccacctaatgctgaatttgctgaacttcgagaaaatagtggaacagagcctgcaaaa
tattatccattccaacttgatgcttttcagaaacaagccatcctttgtattgataacaat
caatccgttcttgtctcagctcacacatctgctggtaaaaccgttgttgcaacatatgct
atcgctaagtgtctcagagaaaagcaacgtgtcatctacacgtctccaatcaaagcactg
tcaaaccaaaaatatcgagaattggaagaagaattcaaagatgtcggattgatgactgga
gatgttactctaaatccagatgcatcttgtctcgtcatgacaacagaaattctcagatca
atgctttacagaggatcagaaataatgaaagaagttggatgggtagtttatgatgaaatt
cattacatgcgagataaagagcgcggagttgtctgggaggaaacaattattctgatgagc
aagaacatcaaacaggccttcctatcggcaacaattcctaatgctagacagtttgcacaa
tgggtcgccagcatcaagcaacaaccagttaacgtggtttacacagactatcgtccaact
cctctccaacactggatatatccagtaggtggagaaggaatgtatgaagtggttaatgtg
aagggtgaattccgcgaagacaaattcagagacgcgatgagcggattggcaacagctgga
gattctgccggaagtttcaataaaagaagaactggtggaggaactcaaggagattcaaac
gttctcaaaattattcgatcagtggcttccaatgatggccttaactgtatcgttttctca
ttttcgcgaaaagaatgcgagtcgtatgctataagtttgaaagatatggatttcaataaa
gatcacgaaaaaggaatggtcaaatcggtttatgagagtgcgattgcgcaattatcacct
gaagaccaaaaacttccacagattttgaacattcttccactacttcgccgtggaatcggt
gtccatcactctggattgatgccaattttgaaagaaacaattgaaattctattcggagag
ggtcttgtaaaagtcttgtttgccactgaaacattctcaatgggtctcaacatgcctgct
cgaactgttgttttcacttcagctcgtaaatttgatggcagtgataaccgatatatcacg
tcaggagaatacattcaaatggctggaagagctggaagacgtggaaaagatgatagagga
actgttattcttatggtcgactctgcaatgtctgctgatgatgcgaaacaaattattaag
ggtgctactgatccactgaattcgcaatttcgtctcacctataacatggttctcaattta
atgagagttgaaggaatggctgtttcatggattatcaataacagttttcatcaattccaa
agctatgctaaaattcctgaaatcgataaaaaatgcgtgcaggttgaacgaaagattgct
tcattcaatttcccatgggaaaatgaaatgcgcactttggtagatcttcaagatcaattg
gaggcaactcgtcaaagaattattcaaattcaacgagaacccaaatatattgtcggtttt
cttcacgcgggacgccttttcaaggtaaaatccggtgatcgtgatttcaaatggggaatt
ttgaatcaattcaaaaaagaacagaatccagacgaccgcaatgatcaaatttatctgtgt
gacatgatgattgcaattaacacagaaggtcgatttgatccaacaaatcccgcaactctt
gttcctggattcgatttgccaaagcgtcgctggattcgtgtgcctatgaccatcgataga
atcactgcaatttctgctgttcgcctcaaagttccagcagatattgataagccagatgga
caaatgcgtcttgacggtatgatggctgcagctacaaagcgatttggcaatcaaattcca
ttattggaccccattcaggatatggaaatcaaaaccgtggaaatgaaggaactgattgca
cgcgagaaaagcttggaaggacgattggagacacattcaatgacaaagcgtgataatatg
aaagatctcaaaaaacaatttgaacagaaacaagacgctgtgaaagaattaaatgctttg
aaagccgaaagaaaaagtgtacaaagtacattgcatttggaagaattaaacaatagaaaa
cgtgttctcagaagacttggttatctgggaaacgatgatgctcttgttcttaagggatcc
gttgcctgtgaattatccgcttcagatgagttgatcttgacagaaatgctcttgaaagga
attttcaatacgcttgatgtcgctcaaacggctgctctactctcgtgtttcgtgttccaa
gacaaatgtgcagctccgaagttggcaacagaacttcagacatgtctcagtgaacttcat
gaacaagctagaaatgtggcgaaggtatcaaatgaatgtaaaatggaagttatggaggac
aagtatgtcagtagtttcaatcctggactcatggatgtcgtatatcaatgggttaacgga
gctacgttcagtgaaattgtcaagactacggatgtttttgaaggctcaatcattcgaacc
ttgcgacggctggaagaagttctacgtgagatgatcaacgccgccaaggctttagcgaat
aaggagttggagcaaaagttcgaagatgctcgaaagaatttgaagagagatattgttttc
gctgcatctctctatctataa

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Ontology (6)   
   KEGG BRITE (6)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (53)   

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