KEGG   Caenorhabditis elegans (nematode): CELE_F23B2.13
Entry
CELE_F23B2.13     CDS       T00019                                 
Symbol
rpb-12
Name
(RefSeq) DNA-directed RNA polymerases I, II, and III subunit RPABC4
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_F23B2.13 (rpb-12)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_F23B2.13 (rpb-12)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_F23B2.13 (rpb-12)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_F23B2.13 (rpb-12)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CELE_F23B2.13 (rpb-12)
  RNA polymerase III system
   RNA polymerase III
     CELE_F23B2.13 (rpb-12)
  RNA polymerase I system
   RNA polymerase I
     CELE_F23B2.13 (rpb-12)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_F23B2.13 (rpb-12)
SSDB
Motif
Pfam: DNA_RNApol_7kD Cytochrome_C7 HypA DUF5816 A2L_zn_ribbon DZR_2 zinc-ribbons_6 zinc_ribbon_2 DZR zinc_ribbon_13
Other DBs
NCBI-GeneID: 184886
NCBI-ProteinID: NP_501593
WormBase: WBGene00009078
Ensembl: WBGene00009078
UniProt: Q9U3I0
Position
IV:complement(9146334..9146869)
AA seq 62 aa
MDGSATPGPGQAHLKSNSMIYICGECHAENEIKPKDAIRCRECGYRILYKKRCRKLMVYD
AR
NT seq 189 nt   +upstreamnt  +downstreamnt
atggacggcagtgcaactccagggccaggtcaagctcatctcaagtcaaacagtatgatc
tacatttgtggagaatgccacgccgaaaatgaaatcaaaccgaaagacgccattcgctgc
agagaatgcggatatcgtattctatacaagaaaagatgcagaaagttgatggtgtacgac
gcccgctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (10)   
   Pfam (10)   
All databases (40)   

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