KEGG   Caenorhabditis elegans (nematode): CELE_Y97E10AR.5
Entry
CELE_Y97E10AR.5   CDS       T00019                                 
Symbol
rpb-9
Name
(RefSeq) DNA-directed RNA polymerase II subunit rpb-9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
cel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_Y97E10AR.5 (rpb-9)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_Y97E10AR.5 (rpb-9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_Y97E10AR.5 (rpb-9)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_Y97E10AR.5 (rpb-9)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     CELE_Y97E10AR.5 (rpb-9)
DNA repair and recombination proteins [BR:cel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_Y97E10AR.5 (rpb-9)
SSDB
Motif
Pfam: TFIIS_C RNA_POL_M_15KD Zn_ribbon_recom TF_Zn_Ribbon CpXC Zn_Tnp_IS1595 zf-TFIIB DZR Gmx_para_CXXCG RUBY_RBDX Lar_restr_allev Ogr_Delta
Other DBs
NCBI-GeneID: 179178
NCBI-ProteinID: NP_505062
WormBase: WBGene00022400
Ensembl: WBGene00022400
UniProt: Q965S0
Position
V:complement(8011213..>8012345)
AA seq 167 aa
MYLQLKSKLENVLSYFFRKMSQGYDNYDDMYDQNGASPAPSQNEKPGKSGPGFVGIKFCP
ECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVNKLVHEIDELTQIVGDIIHDPTL
PKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE
NT seq 504 nt   +upstreamnt  +downstreamnt
atgtatctgcaattaaaatcaaagcttgaaaatgttttatcatattttttcagaaagatg
agccaagggtatgataattacgatgatatgtacgatcaaaacggtgcatcaccggcgccg
agtcaaaacgaaaaacccgggaaaagtgggcctggttttgttggaatcaagttttgccca
gaatgcaataatatgctgtacccacgagaggataaggaatcacgagttttgatgtattcc
tgccggaactgtgagcatcgtgaagtcgccgctaacccgtgtatctatgtgaataagctc
gttcacgaaattgatgagctcactcaaatcgtcggagatattattcacgatccaacgctc
ccgaagactgaagaacatcaatgtccagtctgtggcaaaagtaaggctgtcttcttccag
gctcaaacaaaaaaggcagaagaagagatgagattgtactatgtatgtgcatcgcaagat
tgtcagcacagatggacggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (43)   

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