KEGG   Caenorhabditis elegans (nematode): CELE_C42D4.8
Entry
CELE_C42D4.8      CDS       T00019                                 
Symbol
rpc-1
Name
(RefSeq) DNA-directed RNA polymerase subunit
  KO
K03018  DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_C42D4.8 (rpc-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_C42D4.8 (rpc-1)
Enzymes [BR:cel01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CELE_C42D4.8 (rpc-1)
Transcription machinery [BR:cel03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     CELE_C42D4.8 (rpc-1)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 177491
NCBI-ProteinID: NP_501127
WormBase: WBGene00004411
Ensembl: WBGene00004411
UniProt: Q18566
Position
IV:complement(7160135..7165748)
AA seq 1400 aa
MGKEQFREADKALKVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPK
MGVSTKTGTCSTCGLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTP
EQHRVFSRQVMNPNLDYLHRKALHKRIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFA
SPVSVDELGKFATMFSSNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEE
KHPNDLLLTRMPVPPVCIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSK
TLFETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFS
GRTVISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPGANYLVEK
KTGNKKLLKYGKRDELAKNLRMGDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVMPGR
TFRFNECACTPYNADFDGDEMNLHLPQTYEAKAEASELMNVKNNLITPRSGEPLVAAIQD
FITGGYLLTHKDTFLPRAEVYRFAAALIDASAKKQTKIRIPPPAIRRPVELWTGKQLIEL
IIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIF
YMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQLVDNGYSKC
SQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCLRNLSKYNAPLTMAVCG
SKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTPEAKGFVANSFYSGLTP
TEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASYDGTVRSSVGDVIEFVFGE
DGLDPAMMEAKDGSVVDFTHVLEHAKNIQTTKEQPIPVDKLDEVLKAEIQKKFKGKYVHF
ADKLSEYITQTEIKKSKKWQNGKAHCGNHETADLKTKESCKICKNLEAYKTSLLANSCLT
KTQLCSFIELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGV
PRIKEIINAVKTISTPIITAALLDPYDESLARRVKARIEKTTLGEICDYIEEVYLPDDYF
LLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSK
TMTMQILKYSLANVVVKGIPSVNRCVIHADEKKGDFYSLLVEGTDFRSVLSSVGVDPRKT
NFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLGITRN
GLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQKY
DKKAVLKQNSPIFERLNVTL
NT seq 4203 nt   +upstreamnt  +downstreamnt
atgggtaaagagcagtttcgggaggccgacaaggccttgaaagttgtcggcgtaaagttt
gctcctggagattgtgagtttatgcgtcagacggctcatgttccgattttcaataataaa
ttgtacgaagatgttgaaggaaaattgcagccagcaaactatggaccactcgatccgaaa
atgggagtctccacaaaaactggaacttgctctacatgcggtctcggactgacagattgt
gttggtcactttggctattttgatctcgatgttccagtgttccatattggatttttcaag
ttaactattcaattgcttcaatgcatctgcaaaaactgttcatctattcttctaactcct
gaacaacaccgtgtcttttctcgacaagttatgaatccaaatcttgattatctgcacaga
aaagcacttcataaacgcattgtcgcagcatgcaagaaaggttccacttgttctcattgt
ggcttgaaaaatggaaccgtaaaaaaagccgtcggagcagttctgaagattgccttcgcc
agtcctgtttcagtagacgaacttggtaaattcgctacaatgttcagttcaaaccaagaa
gttggtgatcatgttcgtaagatgaagttcacattgcttaatccactattcgtgcagaaa
cttttctccaatatcaaggaaggggacattcctgttctaatggttcgatccggagaggaa
aagcatccaaatgatcttcttctcactcgaatgccagttccaccagtttgcattcgtcct
tctgttgtttcagaagtcaaagctggaactactgaagatgatgtgactatgaagcttatg
gaaattatgttaacaaatgatgtactcaagaagcataaaagagatggagcacccagcaag
acacttttcgaaacttgggagcatcttcagatacaatgtgctctatacatcaattctgaa
atgtcaggacttccaccagatatgcaaccaaaaagagcgatgcgtgcatttactcaacgt
ctaaaaggaaaacagggaagattccgtggaaatctttgtggaaaacgtgttgatttctct
ggccgtactgtaatttcacccgatccaaatcttcgaatcgatcaagttggtgtgccaatc
cacgtcgccatgactctaacgttccccgaaattgtgaatgcatcaaatattgagaaaatg
cgtcaattggtaatcaatggaagtgatgttcacccgggagcgaattatttggtcgaaaag
aagacgggaaacaaaaagttattgaaatatggaaaaagagatgaactggcaaagaattta
agaatgggagatacaattgaacgtcaccttgatgataacgatgtggtcttgttcaatcgt
caaccatctcttcacaagatctctattatgagccatagagcaaaagtaatgccgggaaga
acgttcagattcaatgaatgtgcttgtactccctataacgccgattttgacggagatgaa
atgaatttgcatttaccacagacatatgaggcaaaagccgaagccagtgaattgatgaat
gtgaagaataacttgatcactcctcgttcaggagaacctcttgttgctgctattcaggat
ttcattactggaggatatttgctcactcataaggatacctttcttccacgtgccgaagta
taccgttttgctgctgctctcattgatgcatctgcaaagaaacaaacgaaaatccgaatt
ccaccaccagcaattcgtcgtcctgttgagctttggaccggaaagcaacttatcgagctc
attattcgcccagacaaaggttcggatgtgtcgctgaatttgaccgccaaaaataagtcg
tacactggaaatcttgaattgtgctccaaagattcgtacgttattatcagaaattcagtt
ctgttggcaggatgtttggataaatctctgttgggttcgtcgtcaaaagttaacattttc
tatatgttgatgagagattatggagaggacgctgcagttgatgcaatgtggagattagcc
agaatggctccagtatttctatcgaatcgtggattttccattggaatcggtgatgtacgc
ccaagtgagcagttgttgcgagaaaaggggcaattggtcgataatggatattcaaaatgt
tcgcaatatatcaaagagctggaagaaggaaaactaaaagctcaaccaggttgcactgaa
gaagaaactcttgaatcaattattttacgcgagctttcaacgattcgtgatcatgctgga
caagtatgtcttcgtaatttgagcaagtacaatgcaccattgactatggctgtttgtggt
tcaaaaggatctttcattaacatctctcaaatgattgcatgtgtcggacaacaggctatc
tctggacaccgaccgcccgatggattcgaagaacgttcacttccacatttcgaacgaaaa
aagaagacaccagaggcaaaaggattcgttgccaacagtttctactctggacttacacca
accgaattctttttccatacaatgggaggacgtgaaggtcttgtagatactgctgttaag
actgctgaaactggttacatgcaaagacgtcttgtcaaatgtctcgaggatctatgtgct
tcttatgatggtacagttcgttcttcagttggtgacgtcattgaatttgtgttcggagag
gatggactagatccagcaatgatggaagctaaggatggaagtgttgttgattttacgcac
gtcttggagcatgccaaaaatattcaaacaacgaaagagcaaccaattccagtggataag
ctcgatgaagtgctgaaagcagaaattcaaaagaaattcaaaggaaaatatgttcacttt
gctgataagcttagcgaatatatcactcaaactgaaattaagaaaagtaaaaagtggcaa
aatggaaaagctcattgcggaaatcatgagacagctgatttaaaaactaaagagtcttgc
aaaatttgcaagaatttggaagcctataaaacatcacttcttgcaaactcatgtctaaca
aagacccaactctgcagtttcattgaattatgttactataaagtggcaagagcaatcaca
gagcccggtactgcagttggagctattgccgcaactagtattggagaaccatcgactcaa
atgacactgaaaactttccatttcgccggagttgcttctatgaatattacacagggagtg
ccaagaatcaaggaaattatcaacgctgtcaagacaatttctactccaattatcactgca
gcactgctggatccttacgatgaatcgttagccagacgtgttaaagctagaattgaaaag
accacattgggagaaatctgcgactatattgaagaagtttaccttccggatgactatttc
ctacttgttaaactgaactcaaaacgtattcgacttcttcaattggaagtttgtatggaa
tcaatttcatatgcaattgcaacttcaaaagtgtgtccacagatgagaggatgtaaaatt
gttgctcatggaaagacaatgatggcaattcgaccaccatctacaagcaaattaagtaaa
actatgacaatgcaaattctcaaatattctctcgcaaatgtggtagtcaaaggaattcca
tcagtgaatcgatgtgtcattcatgcagatgaaaagaagggtgatttctattctcttttg
gttgaaggaactgatttccgatctgttctctcttctgttggagttgatccaagaaaaacg
aattttaataatgcactcgtggtcgctgatgttcttggaattgaagcagctcgttcgtgt
attatcaatgaaatcattgcaacaatggatgctcatggaattggattggatagacgtcac
gtcatgcttctcgcggatgttatgacttacagaggagaagtacttggaatcactcgtaat
ggtctcgttaaaatgaaagattccgtacttttacttgcttccttcgaaaaaacgatggat
cacttgtttgaagctgcatttttctctcaacgtgacgtgattcatggagtttcggagtgt
attattatgggaaccccaatgactgtcggaaccggtacattcaaattgatgcagaaatac
gacaagaaagccgttcttaaacagaattcgccgattttcgaacgtctgaacgtcactctt
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (30)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (50)   

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