KEGG   Caenorhabditis elegans (nematode): CELE_F01G4.3
Entry
CELE_F01G4.3      CDS       T00019                                 
Symbol
skih-2
Name
(RefSeq) Helicase SKI2W
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CELE_F01G4.3 (skih-2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cel03019]
    CELE_F01G4.3 (skih-2)
Enzymes [BR:cel01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CELE_F01G4.3 (skih-2)
Messenger RNA biogenesis [BR:cel03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     CELE_F01G4.3 (skih-2)
  mRNA degradation factors
   3'-5' decay
    Ski complex
     CELE_F01G4.3 (skih-2)
SSDB
Motif
Pfam: DSHCT DEAD Helicase_C Ski2_N ResIII MTR4_beta-barrel Ntox28 DUF3516
Other DBs
NCBI-GeneID: 178017
NCBI-ProteinID: NP_502084
WormBase: WBGene00008502
Ensembl: WBGene00008502
UniProt: Q19103
Position
IV:complement(11135566..11142364)
AA seq 1266 aa
MLEEEAERLFRLECLETLNWPPCAPIPFHITKQNPSAEFYNVADNLDSLLQPIDAPANII
AQVDSNGKIIGFVENERIIVGSANTSMSINRAPYKQRSLHTTAGNSIKGSPGNVPFLPGF
LEELDDLLAGETTAKSTSGEESKFLSFKDDATLLNTIPTIGQIVLPNHSSVKKPAETPKS
INIEEMDMFDLLDMVTSNEYIIHTVAAPVKKSESIESEETPEDDKKVSENEIDEIEIPII
PGNTEKVIEIFGAATEPTKEKFEFAQRLVLSADEEDEYKRLVPTMARKYPFSLDPFQQSS
VLCMERGESLFVAAHTSAGKTVVAEYAIALCQAHKTRAVYTSPIKALSNQKFRDFKQIFG
DVGLVTGDIQLHPEAACLIMTTEILRSMLYNGSEVIRDLEWVVFDEVHYINNEERGHVWE
EVLIMLPAHVKIVMLSATVPNCVEFADWVGRIKNRKINVISTDRRPVPLEHFLYTGQDGK
TQKDLFKIIDRSGQFILKGYNDAKDSKAKIYEKEKAGGAGGRGTQRGGGRGGGGNGGGRN
WPGKNDKNIYLNLINYMKCSDQLPMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFF
SQCVQRLKGSDKELPQVLTMRDLCLRGFAVHHSGILPILKEVVELLFQKGYVKILFATET
FAMGVNMPARCVVFDSIMKHDGTERRMLNPGEYTQMAGRAGRRGLDLTGTVIIICKDSTV
PQPDVLKNLISGQALRLESKFRVTYSMILNLLRVEQLKIEDMLQRSYVESDSLRESKEKR
KSLVDTKNAIQTMSTIECSTCSPNSQLRDYHDALAVFLRKSEHIWPKLNDENVINKLLCS
GRFLIVNSAQQQLQNECVLLIKELNNKTLQILVASADADETTNKNAAAIGFSKLPKSELS
WLTEENSLLSTSKFGTRGAAHCSTNIRSFRLCEIPLSGIVAVMKKCAKGVQSGEILQEYN
MTQIPRFRDRELSENVKKLLQQITTAVPGLKSGEIETYTWKELGSFCQNLDTSFDTDLLE
KLEYNLNLPQSFPARHCTRFDEHFSVLRDRIRIERKIESLEYELSSDALLLSEEYHNRLK
VLEALNFVEQKMVSLKGRIGCEIHHQELLITELILDYKFHQRSPAELAALLSTLTCQYNS
GREMQFGGDTVFGEISESVKSVLTRLESVASKHKSQISDLGCEIRFDLMEVVYEWANGTP
FYQIMEMTDCQEGLIVKCIQRLDEVCKDVRNAGRIVGDPALVEKMEEVSASIRRDIVFAA
SLYTTV
NT seq 3801 nt   +upstreamnt  +downstreamnt
atgttagaagaagaagcggaacgtttgttccgtttggaatgtctggaaactctgaactgg
ccaccatgtgctcctataccatttcatattacaaaacaaaatccaagtgctgaattttat
aatgtagccgacaatttggactcacttttgcagccgattgatgctccggcaaatatcata
gcacaagtagattcaaacggaaaaatcataggatttgttgagaatgaacgaattattgtc
ggttcagccaacacttcaatgtcaatcaacagagctccgtacaaacaaagaagcttacat
acaactgctgggaacagtatcaagggatcgccgggaaatgtaccatttcttcctggattt
ttagaagaattagacgatctgctggctggtgaaacaacagcaaaatctacatctggagag
gaatccaaatttttgagttttaaagatgatgcaactctattgaacacaatacccacaatc
ggacaaattgtgctaccgaatcattcttcagttaagaaaccggctgaaacaccgaaatcc
attaatatcgaagaaatggatatgtttgatctactagatatggttacctctaacgaatat
atcatacatacagtggcggctcctgtcaaaaaatctgagtccattgaatcagaagagact
ccagaagatgataaaaaagtttctgaaaacgaaattgatgaaattgaaattccaattatt
ccgggaaacacggaaaaagttatcgaaatcttcggagctgcaactgagccaacaaaagaa
aagtttgaattcgcgcaaagattggttttgagtgcagatgaagaagatgaatacaagaga
cttgtgcctacaatggcgagaaagtatcccttctctctggatccatttcaacaatcttca
gttttatgcatggaacgaggtgaatcgttatttgtagctgctcacacttctgctggaaaa
actgttgttgctgagtatgcaattgcactttgtcaagcacataaaacacgagccgtctac
acgtcgccgattaaagcattgtccaatcaaaaattcagagattttaaacaaatttttgga
gacgtaggattagtgacaggagatattcaattgcatccagaagcagcatgccttattatg
acaacagaaattcttagatcaatgttgtataatggttcagaagttattcgagatcttgaa
tgggtcgtttttgatgaagttcattatattaacaatgaagaaagaggtcatgtgtgggaa
gaagtgctcattatgctccctgctcatgtgaaaattgtaatgctctcagcgactgtacct
aactgtgtagaattcgctgattgggtgggaagaatcaagaatcggaagatcaatgtaatc
tcaacagatcgaagacctgttccacttgaacattttctgtacactggtcaagatggaaaa
actcaaaaagatttgttcaaaattattgatcgtagtggacaattcattctgaaaggatac
aatgatgccaaagattcaaaagctaaaatttatgagaaagaaaaggctggaggagctggt
ggaagagggacacaaagaggtggaggacgaggtggtggcggaaatggaggtggaagaaat
tggccaggaaaaaatgataaaaacatttatctaaatctcatcaattatatgaaatgctct
gatcaacttccaatggttgtattcgttttttcgcgaaaaagatgtgatgagaatgctcaa
atgcttgcttcgatgaatttaacaactgaagttgagaaacaacatgtacgactattcttt
tcacaatgtgttcaaagattaaaaggatctgataaagaacttccacaagtactcacaatg
agagatctttgtttgagaggatttgctgtacatcattcaggaattcttccaattttaaaa
gaagttgttgaattgcttttccaaaaaggatatgttaagattcttttcgctactgaaaca
ttcgcaatgggagtcaacatgccggcgcgatgtgtggtatttgatagtatcatgaagcat
gacggtacagaacgtcggatgcttaatcctggagaatatactcaaatggctggacgtgcc
ggaagacgaggtctcgatttaacgggtactgtaattatcatttgcaaagactcaactgtg
ccacaaccggatgttctcaaaaatttgatcagtggccaagctcttcgattagaaagtaaa
ttccgtgtcacatactcgatgattctcaatttgcttcgtgttgaacaattgaaaattgaa
gatatgctccaaagaagttatgtggaaagtgattctctgagagaatcaaaagaaaaacga
aaatcattagttgatacaaagaatgcaatccaaacaatgtcaactatcgaatgttcaact
tgttctccaaattctcaacttagagattatcatgatgcacttgcggttttcttgagaaaa
agtgaacatatttggccgaaattaaacgatgaaaatgtgatcaacaaattactctgctca
ggacgatttttgattgtgaacagtgcacagcaacaacttcaaaatgagtgtgttctattg
attaaagaattaaataacaagactctacagatccttgttgcatcggccgacgcggatgag
acaactaacaaaaatgcagccgctattggtttctcaaaactgccaaaatcagaactcagc
tggttgactgaggaaaactctttactatcaacgtcgaaattcggaactcgcggagctgca
cactgttctacaaacatcagaagtttcagactttgtgagattccactctctggaattgtc
gctgtaatgaaaaagtgtgcaaaaggagtacaaagcggtgaaattctacaggaatacaat
atgacacagattcccagattcagagacagagaattgtctgaaaatgtgaagaaacttctt
caacaaattacgaccgctgttcctggattgaaaagtggcgaaattgagacgtatacatgg
aaagaacttggatcattttgtcagaatcttgacacgagcttcgacacagatttattagag
aaattggaatataatctcaatttacctcaatcattccctgctcgacattgtacgcgattt
gatgaacatttttctgtactacgtgatcgaatcagaattgaacgaaaaatcgaaagtctt
gaatatgagctgtccagcgatgcattgttgctcagtgaagaatatcataatcgcctgaaa
gttcttgaagcccttaattttgtcgaacaaaagatggtcagtttgaaaggacgaattggt
tgcgaaattcaccatcaagagcttctaatcactgaactcattttggattataaattccat
caacgatctccggccgaattggctgctcttctgtcaactcttacttgccaatataatagt
ggaagagaaatgcaatttggaggggatacggtgtttggtgaaattagtgaaagtgtgaaa
tcagttctcacaagattagaatctgtggcatctaaacataaatctcaaatttctgatttg
ggatgtgaaattcgatttgatctgatggaagttgtgtatgaatgggcgaatggaacaccg
ttctatcaaatcatggaaatgactgattgtcaagaaggccttatcgttaagtgtattcaa
cgattggatgaagtttgcaaagatgttagaaacgctggcagaattgttggagatcctgct
ctggttgaaaaaatggaagaagttagtgcatcaattcgacgggatattgtttttgcagcc
tccctttatactaccgtctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (48)   

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