KEGG   Caenorhabditis elegans (nematode): CELE_Y46G5A.4
Entry
CELE_Y46G5A.4     CDS       T00019                                 
Symbol
snrp-200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CELE_Y46G5A.4 (snrp-200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cel03041]
    CELE_Y46G5A.4 (snrp-200)
Enzymes [BR:cel01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     CELE_Y46G5A.4 (snrp-200)
Spliceosome [BR:cel03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    CELE_Y46G5A.4 (snrp-200)
 Complex C
   U5 SnRNP specific factors
    CELE_Y46G5A.4 (snrp-200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII BRR2_plug Helicase_C AAA_22 HTH_61 nSTAND3 AAA_19 PhoH
Other DBs
NCBI-GeneID: 174901
NCBI-ProteinID: NP_001366952
WormBase: WBGene00012896
Ensembl: WBGene00012896
Position
II:complement(12726963..12736910)
AA seq 2145 aa
MADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKG
KAPVQDQKKKRKKKDDEKAQQFGRNVLVDNNELMGAYKPRTQETKQTYEVILSFILDALG
DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFSIE
EENKPEGDGDIYENEGVNVQFDSDEEEDDGGMVNEIKGDSEEESEEEEGVDTDYTATLKG
DGHLTEDEQKARGILHPRDIDAHWIQRSLAKYFKDPLIAQQKQTEVIGILKNAADDRDAE
NQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQANEKERLQIEDDMRSRPELHPILALLQ
ETDEGSVVQVEKSKRDAEKSKKAATAANEAISAGQWQAGRKMLDLNDLTFSQGSHLMSNK
RCELPDGSYRRQKKSYEEIHVPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQS
RLCDSALRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKS
LVQEMVGSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYN
QMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLR
VKPEHLHFFDNSYRPVPLEQQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHS
RKETAKTAKAIRDACLEKDTLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHA
GMNRVDRTLVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGAL
DIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVL
GTVSSVSEATNWLGYTFLFVRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKA
GLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLL
SVRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQS
AGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKN
YSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPD
FKWDEKVHGSAEGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYY
VRIVSDRWIGAETVLPISFRHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFK
VFNPIQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLRHFENTPEAKAVYITPMEDMA
TKVYADWKRRLEPAIGHTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQ
NVKLFIADDLHMIGASNGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGC
SASATFNFMPSTRPVPLDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFV
PVRRQTRPVAVALLTMALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLH
EGTAPKDVHIVQQLFESNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPI
ADMLHMVGLANRPILDSDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIV
TKTIENKQDAIDYLTWTLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKC
IAVKDEMDTVSLNLGMIASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMR
HKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTELIVLRACR
LVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAKAKEVTS
VFELLELENDDRSDILQMEGAELADVARFCNHYPSIEVATELENDVVTSNDNLMLAVSLE
RDNDIDGLAPPVVAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAPR
PGHHKFKLFFISDSYLGADQEFDVAFKVEEPGRSNRKRKHEKEED
NT seq 6438 nt   +upstreamnt  +downstreamnt
atggccgacgagctagcccgaatccagcagtatgagtaccggcagaactccaacttggtt
ctgtcggtcgactacaatctgacggatcggcgtggcagagaggagccgactggcgaggtg
ctgccgatcacggataaggagatgcgcaaaatgaagatgggtgaccgggcgatcaaggga
aaagcgccggtgcaggatcagaagaagaagagaaagaagaaggacgacgagaaagcacaa
cagttcggccggaatgtccttgtcgacaataatgagctcatgggagcctacaagcccaga
acccaggagacgaagcagacttatgaagtgattttgtctttcattttggacgcacttggc
gatgttccacgcgaggttctgtgcggagccgctgacgaggtgcttctcacgctgaaaaac
gacaaattccgagataaagagaagaagaaagaagtggaagctcttctgggaccgctcacc
gacgatcgtatcgcagttctcatcaacttatcgaagaagatcagcgatttttcgatcgaa
gaggagaataagcctgaaggcgatggagacatctacgagaatgagggtgtaaatgtgcag
ttcgactcggatgaggaagaagatgacggtgggatggttaatgagatcaaaggtgatagt
gaggaggagagtgaagaggaagaaggtgtggatacagattacacggcaacactcaaagga
gatggtcatttgacggaagatgagcaaaaagcacgaggaattcttcatccacgtgacatc
gacgctcattggatccaaagatcgctcgccaagtacttcaaagatcctctgatcgcccaa
cagaagcaaacggaagtcatcggaattctcaagaacgccgccgacgatcgtgacgccgag
aatcagcttgtcctgctgttaggcttcgatcagttcgagttcatcaagtgccttcgccag
aatcgtcttatgatcctctactgtacacttttgcgtcaggcgaacgagaaggagcgtctc
caaatcgaagatgatatgcgatctcgtccagagcttcatccgattcttgcacttcttcag
gagactgatgagggatctgttgtgcaggtggaaaagtcgaaacgagacgcggagaagtcg
aagaaggccgccacagcagcaaatgaagccatcagtgcgggacagtggcaggcgggccgc
aagatgttggatctaaacgatctcacgttcagtcaaggatctcatttgatgagcaataaa
agatgcgagctccccgacggatcctaccgccgccagaaaaagtcctacgaagaaatccac
gtaccagccctcaaaccacgaccatttgctgaaggagagaagctcgtcagtgtctcagag
ctcccgaaatgggcccaaccggctttcgacggctacaagtcgctgaacaggatccaatcc
cgactctgtgattcagctcttcgatccaaagagcatctcttgctctgtgctccaactgga
gctggaaagacgaacgtggcgctgctcacgatgctccaagaaatcggaaaccacttggca
gaggatggaagtgtgaagctcgatgagttcaagattgtctacattgctccgatgaagtca
ctggttcaagagatggttggaagcttctcaaaacgtcttgctccattcggaatcactgtc
ggcgaaatgaccggagatgctcaaatgagcaaagagcagttcatggcgacacaagtgatc
gtttgtacgccggaaaagtatgatgtggtgacgcgaaaaggcggagagagagcctataac
cagatggttcggctgttgatcattgatgagatccatctgcttcacgatgatcgtggaccg
gtgttggagtcgatcgtcgtcagaacgattcgtcaaatggagcagaatcacgatgagtgc
cgactggtcggactttcagcaactcttccgaattatcaagatgtggcgacgttcttgcga
gtgaagcctgagcatttgcacttctttgataacagctatcgtccagttcccctcgagcaa
caatatattggagttactgagaagaaggctttgaagaggttccaggcgatgaacgaagtg
gtgtacgacaagattatggagcacgccggaaagagccaagtcctcgtttttgtgcattcc
cgaaaggaaactgcgaaaaccgcgaaagcgattcgtgacgcgtgcctcgagaaggacacg
ctgtcggcgttcatgcgtgagggctcagcgagcacagaaatcctgagaaccgaggccgag
caggcgaagaatttggatttgaaggacctcttgccgtatggattcgctattcatcacgct
ggaatgaacagagttgatcgtacactcgtcgaggatttgttcgctgatcggcatattcag
gtgctcttttcgactgcaactctcgcttggggagtcaatctgccggctcatactgtaatc
atcaagggaactcagatctataacccggaaaaaggacgttggacagagctcggagcactc
gacatcatgcaaatgctcggaagagccggacgtccacagtacgatgatcgcggagaggga
attctcatcacaaatcactcggagctccagtattatctctcgctgatgaatcaacagctt
cctgtcgagtcgcagatggtctcacggctcactgatatgctcaacgctgaggttgtgctc
ggcactgtcagtagtgtgtcggaggcgacgaattggttgggttacactttcctttttgtg
agaatgttgaagaatccgacgctttatggaattacacatgagcaagcgcgcgccgatcct
cttctagaacaacgtcgtgccgatctcatccacacagcttgcgtgcttctggacaaggcc
ggactcatcaaatatgacaagcgaagcggaatcattcaggccaccgagctcgggcgcatc
gcttctcacttctactgcacatacgagtcgatgcaaacctacaacaagctgctggtcgag
acgtgctcggatatcgatctcttcagaattttctcgatgagctccgaattcaagttgctg
tcggttcgcgatgaggagaagctggaacttcagaagatggcagagcacgcgccgattccg
atcaaggagaacctggatgaagcgtcggcgaagacgaatgtccttcttcaagcctatatc
tcacagttgaagctcgaaggattcgcgcttcaggcggatatggtcttcgtggctcagagt
gccggacgactcttcagagctcttttcgagattgtgctatggagaggttgggctgggctc
gctcagaaggtgctcactctttgcaagatggttacacaacggcaatggggatcgttgaac
ccgctgcatcagttcaagaagatcccgagcgaggtggttcgatcgattgacaagaagaac
tactcgttcgatagactgtatgacttggatcaacaccagctgggagatttgattaagatg
ccgaagatgggaaagccgctcttcaagttcattcgccagtttccgaagcttgagatgact
actctcatccagccgatcacaagaaccaccatgagaatcgagctgacaattacgccagac
ttcaagtgggatgagaaggtgcacggaagcgccgaaggtttctggatcttcattgaggat
accgatggcgagaagatccttcatcacgagttcttcctgctcaagcaaaagttctgctcg
gatgagcatgttgtgaagatgattgtgccgatgttcgatccgatgccaccactctactac
gttcggatcgtgtcggatcgatggatcggcgcggagacggtgttgccaatctcgttccgt
catttgattctgcctgagaagtaccctccaccgacagagttgctcgatctgcagccgttg
ccaatttctgcagttacgaataaggaatttcagacagtttttgctgaaagtggattcaag
gtgttcaatccgattcagacacaggtattccgcacggtcttcgaatccaacgaaaatgtg
atcgtgtgtgctccaaatggctccggaaaaaccgcaatcgccgagctcgccgttctccgt
cactttgagaatacaccagaagccaaggcagtctacattacaccaatggaggatatggcg
acaaaagtctacgcagactggaagcgacgtctcgaaccggccatcggacacacgattgtg
ctgctcaccggcgagcaaacgatggatttgaagttggctcaacgcggacagctcatcatt
tcgacgccagaacgatgggataacatctcgcggcgttggaagcagagaaaaagtgtgcag
aatgtgaagttgttcattgcggatgacttgcacatgattggtgccagcaatggggcggtg
ttcgaagtggtgtgctctcgaactcgctacatttcatctcaactcgaatctgccgtccgt
gtcgttgctctttcctcatcgctcaccaatgctcgtgatctcggaatgtggctcggatgt
tccgcgtcggcaacctttaacttcatgccgtcgactcgtccagtgccgctcgatttggag
atcaaatcgttcaatttgtcgcacaacgcgtcgagattcgctgcaatggagcgtcctgtg
tatcaggcgatttgcagacacgccggaaagttggaaccgaaaccagcgttggtttttgtt
ccagtgcgtcgtcaaacccgcccagtcgcagtagctcttctcacaatggcgttggccgac
ggagcgccgaaacgattcctccggctcgccgagcacgacgacacattccaggcgctgctg
gcggatattgaagacgaatcgctccgtgaatcagtttcctgtggagtcggtttcctgcac
gagggcaccgcgccgaaagatgtacacattgtacagcagctcttcgagagtaacgccatt
caggtgtgcgttgtgccacgtggaatgtgctatcaaatcgagatgagcgcatatctggtg
gtggtgatggatacgcagttctacaatggaaaatatcatgtttatgaggattatccgatt
gctgatatgcttcatatggttggacttgcgaatcggccgattttggattcagacgccaaa
tgcgtggtaatgtgccagacgtcgaaacgggcgtactacaagaagttcctgtgcgatccg
ctgcccgtcgaatctcatttggatcattgcctacacgatcacttcaacgctgaaatcgtc
acgaagactatcgagaataagcaagacgccattgattacctaacatggacacttctctac
cgccgaatgacacaaaatccgaactactacaatcttcaaggaaccacacatcgtcatctc
tcggatgctctttcggagctcgtcgagcttacgcttaaagacttggagaatagtaaatgt
attgcggtgaaggatgagatggacacggtctcgttgaatttgggaatgattgcctcgtac
tattatatcagttatcagacgattgagctcttctcaatgtcactgaaggagaaaaccaag
acacgcgctctcatcgagatcatctcagcatccagtgaattcggaaatgttccgatgcgt
cacaaggaggatgtgattcttcgacagctcgccgaacgccttccaggacagcttaagaat
caaaagttcacggatccccacgtcaaagtcaacttgctcattcatgctcatttgtcacgt
gtcaaactgaccgccgagctcaacaaggacacggagctcattgtgctccgcgcgtgccga
ctcgttcaggcttgcgtcgacgtgctctcttcgaatggatggttgtcgccggcgattcac
gcgatggagctctcacagatgctcacacaggcgatgtactcgaatgagccgtacttgaag
cagttaccgcattgttcggcggctcttctcgaacgagcaaaagctaaagaggtcacatct
gtctttgagcttctcgagctggaaaacgacgatcgatcggatattctgcaaatggaggga
gccgagctggccgatgtggcacgattctgcaatcattatccatcgattgaggtggccaca
gagcttgagaacgacgtggtgacgagcaacgataatctgatgttggctgtttcactggaa
cgagacaatgatattgatggactcgcaccgcccgtcgtcgcaccattgttcccgcagaaa
cgaaaggaagagggatggtggttggttattggagattccgaatccaatgcattgttgact
attaaaagacttgtgatcaacgaaaagtcgtcggttcagttggactttgccgctccacga
cccgggcaccacaaattcaagctcttcttcatctcggactcgtacctcggcgcggatcag
gaattcgacgtcgccttcaaggttgaggagccgggacgcagcaatcgcaagcgaaagcac
gagaaggaagaggattaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (38)   
   KEGG ORTHOLOGY (1)   
   RefGene (32)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   WORMBASE (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (57)   

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