KEGG   Crinalium epipsammum: Cri9333_2027
Entry
Cri9333_2027      CDS       T02373                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
cep  Crinalium epipsammum
Pathway
cep03420  Nucleotide excision repair
cep03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cep00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Cri9333_2027
   03430 Mismatch repair
    Cri9333_2027
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cep03400]
    Cri9333_2027
Enzymes [BR:cep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Cri9333_2027
DNA repair and recombination proteins [BR:cep03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cri9333_2027
   MMR (mismatch excision repair)
    Other MMR factors
     Cri9333_2027
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Intein_splicing DEAD Viral_helicase1 PcrA_UvrD_tudor ResIII CarD_TRCF_RID AAA_30 Ku_PK_bind DUF1978 AAA_22 DUF977 SinI Terminase_6N DUF3553
Other DBs
NCBI-ProteinID: AFZ12906
UniProt: K9VY49
Position
complement(2304805..2307930)
AA seq 1041 aa
MTQTTDYLSHLNLSQRRAVEHFCGPLLVVAGAGSGKTRALTYRIANLILKQRVDPANILA
VTFTNKAAREMKDRIQKLFAQQQAEEQYGKPWEALTNEQQTRLRSRVYNSFIKDLWIGTF
HSLFSRILRFDIEKYQDEKGRRWNKNFSIFDESDVQSLIKEIVTKQLNLDDKKFEPRAVR
SVISNAKNQGLSPKEFEQAEINYRGRIIAEVYSIYQNKLAENNALDFDDLILVPVKLFQQ
NEHILEYWHRKFHHILVDEYQDTNRIQYEIIRLLSTNGETNKNNWDWSNRSIFVVGDVDQ
CQPPGSKVLTSEGYLPIEKLNPQQHWLVSYNRSTSDFVGLKGGLKFGKATRDFAGKLVIV
KAGGKKTRCTPNHRWPIKWVSHENNKYHIVYLMRRGELYRVGSCPLFTSNGKLELWQLAK
QEKAEAAWILSSLDKADRAAEKVSAIANEYGIPKTTFEVSSDVNSDDLLALVQDCLSHYG
KDLNYPIYTPEIAFKRNPTASQIDIEAANLVSGIMMIAVERESKELIWETISSIQQEDYT
GSVYSLKVDKHYVYFTDGLLTHNSIYSFRGADYTVLLEFQDDFGDGLPDDDTRSMIKLEE
NYRSRENILQAANKLIENNTQRIDKILKPTREAGEQIYCYKADDEIAEAEFVINQVRSLK
RKDAEIDWGDFAILYRTNAQSRAMEDALVRCGIPYTIVGGLKFYDRKEIKDAIAYLRVIV
NPADTVSLLRIINTPRRGIGKASIDAVAAVSQELSVPLWEILQDETSVKTLAGRAAKQIT
SFVELISHWQKQLDTLSALDIVQGVTKDSGYIQDLQNQGTDEADNRLENIQELYNAVQQF
EEENEDSKLETFLQSASLSSDLDNLKEGDSRISLMTLHSAKGLEFPIVFLVGLEQGLLPH
TRSLNDPVALEEERRLCYVGITRAQERLYLSHACERRLWGSREPAIRSQFLKELPSEFVS
SNVAAAVPRRVSQPKSNITSEDSNATSQKWQVGDQVVHPSFGVGEITHVFGTEKKVSVAV
KFANLGQKIIDPKIGKLQRLE
NT seq 3126 nt   +upstreamnt  +downstreamnt
atgactcaaactactgactaccttagccatctcaacttatctcaacgtcgtgctgtagaa
cacttttgcggccccttgctggtggttgctggggcaggaagcggtaaaaccagggcgctg
acttatcgtattgcaaatttgattcttaagcagcgcgttgatccagcaaatatcctagcc
gtgacttttactaataaggcggcgcgggagatgaaagatagaattcaaaagttgtttgct
caacaacaagccgaggaacaatatggtaaaccttgggaagcattgacaaatgagcagcaa
acaagattgcgatcgcgtgtttacaactcttttataaaagacctttggattggtactttt
cacagcttatttagtcgcattctcagatttgatattgagaagtatcaagacgaaaaaggg
cgacgttggaataagaatttttctatatttgatgaatctgacgttcaaagcttaattaaa
gaaattgtcaccaagcaacttaatttggatgacaaaaaatttgaacctcgtgctgttcgc
tctgtcatcagcaacgctaaaaaccaaggtttatcccccaaagaatttgagcaagcagaa
attaattatcgtggtcggataattgctgaagtttacagtatttatcaaaataaattagct
gaaaataatgctttagattttgatgatttgattcttgtgcctgtgaaattatttcaacaa
aatgagcatatattagaatactggcatcgcaaatttcatcatattttagtagatgaatat
caagatactaatagaattcaatatgaaataattagattattatccactaatggagaaact
aataaaaataattgggattggagtaatagatctatttttgtggtcggagatgtagatcaa
tgtcagcctccaggtagcaaagtattaaccagtgagggatatttaccgattgaaaagttg
aatcctcagcaacattggttagtcagttataacagaagtacttcggattttgttggcttg
aaaggtgggttaaaatttggtaaagctacacgggattttgctggcaagctagtgatagtt
aaagctggaggtaaaaagactcgttgcacccctaatcatcgttggcctattaaatgggtt
agccatgaaaataataagtatcatatagtttatttgatgcggcggggagaattgtaccgc
gttgggtcttgtcctttatttactagcaatggtaagctggaattatggcagcttgcgaaa
caagaaaaagcggaggctgcttggattttatcgagtttagataaggcagatcgtgctgcg
gaaaaagtttcagcaattgctaatgaatatggtattcctaaaactacatttgaagtaagt
agtgacgttaatagtgatgatttactagcgttagtccaagattgcttatcccactatggc
aaagacttaaattatccaatttatacgcctgaaattgcatttaagcgaaatccaacagcc
agccagatagatatagaagcagctaatctcgtgtctggaattatgatgattgctgtagaa
agggagagtaaagaattaatttgggaaacaatcagcagtattcagcaggaagattacacg
ggatctgtatatagtttaaaggtagataaacactatgtttattttactgatgggctgcta
actcataattctatatatagctttcgtggggcagattatactgttttactagaattccaa
gatgattttggggacggtttgccggatgatgatacccgctctatgattaaattagaggaa
aattatcgctctagggaaaatattcttcaagcggctaataagttgattgaaaataatacg
cagcgtattgataagattcttaagccaacacgggaagctggagagcaaatttattgttat
aaggcggatgatgagatagcggaagcggaatttgtaattaatcaagttcgcagtttaaaa
cggaaggatgcggagattgattggggtgattttgcaattctttaccgtacaaatgctcag
tctcgtgcaatggaagatgcgctagtacgttgtggaattccatatacgatagttggaggg
ttaaagttttatgatcgcaaagaaattaaagatgcgatcgcatacttgcgagtaatcgtt
aatcctgcggatacagttagtttattgcggataattaacactccgcgtcgtgggattggt
aaagctagtattgatgctgttgctgctgtttcccaagaattaagcgtacctttgtgggaa
attctgcaagatgaaacatctgttaaaactttagctggacgtgctgctaaacagattacc
agttttgtagagttaattagccactggcaaaaacaactggatacgctttcagctttggat
attgttcaaggtgtaacgaaggattctggatatatccaagatttgcaaaatcaaggcact
gatgaagctgataaccgtctggaaaatattcaggaattatataatgcagttcagcaattt
gaagaagagaacgaagattctaaattagaaacttttctccaaagtgcttccttatcttct
gatttggataatttgaaagagggagattcacgtatatctctgatgactctacattctgct
aaaggactagagtttccgatagtatttttagtaggattagagcaagggttattgccgcat
actcgtagtttaaacgatccagtcgcgttagaagaagagcgacggctttgttatgtgggg
attactcgcgcccaagaacgactatatttgagtcatgcgtgtgaacgtcgcctttggggt
tcccgcgaaccagcaattcgttctcagtttttgaaagaattacctagtgagtttgtgtct
agtaatgttgcggctgctgttcccaggagagttagccagccaaaaagtaatattactagc
gaagattccaacgcaacaagtcaaaagtggcaagtaggggatcaggttgtccatcctagt
tttggagttggtgaaattactcatgtttttgggacggaaaagaaagtctctgtagctgtg
aaatttgccaatcttggtcaaaaaattattgatcctaagattggtaaattgcaacgcttg
gaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (52)   

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