KEGG   Canis lupus familiaris (dog): 479659
Entry
479659            CDS       T01007                                 
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    479659 (SF3B3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cfa03021]
    479659 (SF3B3)
   03041 Spliceosome [BR:cfa03041]
    479659 (SF3B3)
   03036 Chromosome and associated proteins [BR:cfa03036]
    479659 (SF3B3)
Transcription machinery [BR:cfa03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     479659 (SF3B3)
Spliceosome [BR:cfa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    479659 (SF3B3)
 Complex B
    479659 (SF3B3)
 Complex C
   U2 SnRNP specific factors
    479659 (SF3B3)
Chromosome and associated proteins [BR:cfa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     479659 (SF3B3)
    TFTC complex
     479659 (SF3B3)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 479659
NCBI-ProteinID: XP_013969499
Ensembl: ENSCAFG00000020151
VGNC: 46071
UniProt: A0A8C0SSU9 A0A8I3MQG0
Position
5:76451911..76505135
AA seq 1217 aa
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DDWYVLVGVAKDLILNPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgtttctatacaacttgaccttgcagcgagccacaggcatcagctttgccattcatggc
aacttttctggaaccaaacaacaggaaattgttgtttcccgtgggaagatactggagctg
cttcgccctgaccccaacactggcaaagtacatactctgctaactgtggaagtatttggt
gttatcagatcactcatggcctttaggctaacgggtggcaccaaagactacattgtggtt
ggcagtgactcaggtcggatagttatcctggaataccagccatctaagaatatgtttgag
aaaattcaccaagaaacctttggcaagagtggatgccgccgcattgttcctggacagttc
ttagctgtggatcccaaagggcgagctgttatgattagtgccattgaaaaacagaaattg
gtatatatcttgaacagagatgctgcagcccggcttaccatttcatcccctctagaggcc
cacaaagcgaacactttagtatatcatgtggtcggagtagatgtgggatttgaaaatcca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaacaggggaagca
gcagctaatacccagcagacgcttaccttctatgaattagaccttggtttaaatcatgtg
gtccgaaagtacagtgaacctttggaggaacatggcaactttcttattacagttcctgga
gggtcagatggtccaagtggagtgctaatctgctctgaaaactatatcacctacaagaac
tttggtgaccaaccggatatccgctgtccaattcccaggagacggaatgacctggatgac
cctgaaagaggaatgatttttgtttgctctgccacccataagaccaaatcgatgttcttc
tttttggcccaaactgagcagggcgatattttcaagatcactttggagacagatgaagat
atggttactgagatccggctcaagtactttgatactgtgcctgttgctgctgccatgtgt
gtgcttaaaacaggcttcctttttgtagcatcagaatttggaaaccattacttgtatcaa
atagcacatcttggagatgacgacgaagaacctgaattttcgtctgccatgcctctggaa
gaaggagacacatttttcttccagccaagaccactcaaaaaccttgtgctagttgatgaa
ttggacagcctctctcccattttattttgccagatagctgatctggccaatgaagacaca
ccacagctctatgtggcctgtggtagaggaccacgatcatctctgagagtcctaaggcat
ggacttgaggtatcagaaatggctgtgtctgagttacccggtaaccccaatgctgtctgg
acagtgcgtcggcacatcgaagatgagtttgatgcctacatcattgtgtctttcgtgaat
gccacacttgtgttgtcaatcggagagactgtggaagaagtgactgactctgggttcttg
ggcaccaccccaaccttgtcctgctcattgctaggagatgatgccttggtgcaggtatat
cctgatggcattcgacatatacgagcagacaagcgagtcaatgagtggaagactcctgga
aagaaaacgattgtaaaatgtgcagtgaatcagcgacaagtggtgatcgccctgacagga
ggagagctggtctattttgagatggatccttcaggacagctgaatgagtacacagagcgg
aaggagatgtcagcagacgtggtgtgcatgagtctggccaatgtgcctcctggagaacaa
cggtctcgcttcctggctgtggggctggtggacaatactgtcagaatcatctctctggac
ccctcagactgtttgcagcccctgagcatgcaggctctcccagcccagcctgagtccttg
tgtattgtggaaatgggtggaactgagaagcaagatgaactgggtgagaggggctctatt
ggcttcctatacctgaatattgggttgcagaatggtgtgctgctgagaactgtcctggac
cctgtcactggggacctgtctgacacccgcactaggtacctggggtctcgtcctgtgaaa
ctctttcgggtccggatgcaaggtcaagaggcagtgttagccatgtcaagccgctcatgg
ttgagctattcctaccagtctcgtttccatctcacccccttgtcttatgagactctcgag
tttgcatctggcttcgcttctgaacagtgtcctgaggggattgtggctatctccaccaat
accctgaggattttagcgttggagaagctaggtgctgtcttcaatcaagtagcctttcca
ctgcagtacacacccaggaaatttgtcattcaccctgagagcaacaaccttatcataatt
gagacagaccacaatgcctatactgaagcgacaaaggctcagaggaagcagcagatggca
gaggaaatggtagaagcagcaggagaagatgagcgggagcttgctgctgaaatggcagca
gcattcctcaatgaaaacctccctgagtccatttttggagctcctaaggctggcaatgga
cagtgggcttctgtgatccgagtgatgaatcctattcaagggaacacgctggaccttgtc
cagctagaacagaatgaggctgcttttagtgtggctgtgtgtaggttttctaacactggt
gatgattggtatgtcttggtgggtgtggccaaagacctgatcctcaaccccaggtctgtg
gcagggggctttgtctatacctacaagctcgtgaacaatggggaaaaactggagtttttg
cacaagactccagtggaagaggtccctgctgccattgccccattccaagggagagtattg
attggtgtggggaagcttctgcgagtttatgacctggggaagaagaaattactccgaaaa
tgtgagaacaagcatattgccaattacatctctgggatccagactattgggcacagggta
attgtgtctgatgtccaagaaagtttcatctgggttcgatataaacgtaatgagaaccag
ctcatcatttttgccgatgatacttacccacgatgggtcactacagctagtctcctggac
tatgacactgtggctggggcagacaagtttggcaacatttgtgtggtgaggctcccgcct
aacaccaatgacgaagtggatgaggatcccacaggaaacaaagccctgtgggaccggggc
ttgctcaatggggcctctcagaaggcagaggtgatcatgaactaccatgtgggtgagaca
gtgctgtcattacagaagaccacactgatccccggaggctctgaatcacttgtctatacc
accttgtcaggaggaattggcatccttgtcccgttcacatcccatgaggaccatgacttc
ttccagcatgtggaaatgcacctacggtctgagcatccccctctctgtgggcgagaccac
ctcagctttcgttcctattacttccctgttaagaatgtgatagatggagacctttgtgag
cagttcaactccatggagcccaacaaacagaagaacgtctctgaagaactggaccgaact
ccacctgaagtgtccaagaagcttgaggacatccggacccgctatgccttctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (33)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (12)   
   UniProt (2)   
   RefSeq(pep) (10)   
DNA sequence (10)   
   RefSeq(nuc) (10)   
Protein domain (2)   
   Pfam (2)   
All databases (63)   

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