KEGG   Canis lupus familiaris (dog): 488456
Entry
488456            CDS       T01007                                 
Symbol
SF3B1
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
cfa  Canis lupus familiaris (dog)
Pathway
cfa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    488456 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cfa03041]
    488456 (SF3B1)
   03036 Chromosome and associated proteins [BR:cfa03036]
    488456 (SF3B1)
Spliceosome [BR:cfa03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    488456 (SF3B1)
 Complex B
    488456 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    488456 (SF3B1)
Chromosome and associated proteins [BR:cfa03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    488456 (SF3B1)
SSDB
Motif
Pfam: SF3b1 HEAT_EZ Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central TALPID3
Other DBs
NCBI-GeneID: 488456
NCBI-ProteinID: XP_545578
Ensembl: ENSCAFG00000010826
VGNC: 46069
UniProt: A0A8C0MSS3 A0A8I3QBG5
Position
37:complement(7870202..7908677)
AA seq 1304 aa
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq 3915 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattctacaggttattatgac
caggaaatttatggtggaagtgacagcagatttgctggatacgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgatataccacaatcaacagaacag
tatgatccattcgctgagcaccgacctccaaagattgctgaccgggaggatgaatacaaa
aagcacaggcggaccatgataatatccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgagaacagcat
ttaactaaagaagagagagaaattaggcaacagctagcagaaaaagctaaagctggagaa
ctaaaagttgtcaatggagcagcagcatcccaacctccctcaaaacgaaaacggcgttgg
gatcaaacggccgatcagactcctggtgccactcccaaaaagctgtcaagttgggatcaa
gcagagacccctggacataccccttccttaagatgggatgagacaccaggtcgtgcaaag
ggaagtgagactcctggagcaaccccaggctcaaaaatatgggatcctacacctagtcac
acaccagcgggagctgctactcctggacgtggggatacaccaggccatgcaacaccaggc
cacggaggcgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagaccgaggtgga
gactcaattggtgaaacaccaactccgggagccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggaagcacacctgttctgacccctggaaagacaccaatt
ggcacaccagccatgaacatggctacccctactccaggtcacataatgagtatgactcct
gaacagcttcaggcgtggcggtgggaaagagaaattgatgagagaaaccgccccctttct
gatgaagaattagatgctatgttcccagaaggatataaggtacttcctcctccagctggt
tatgttcctattagaactccagctcgaaagctgacagcaactccaacacctttgggtggc
atgaccggtttccacatgcaaactgaagatagaactatgaaaagtgttaatgaccaacca
tccggaaatctcccatttttaaaacctgatgatattcagtactttgataagcttttggtt
gatgttgatgaatcaacacttagtccagaagagcaaaaagagagaaaaataatgaagctg
cttttaaaaattaagaatggaacacctccaatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttccactcctgatg
tctcctacactggaggatcaagagcgtcatttacttgtgaaagttattgatcgaatatta
tacaaacttgatgacttagttcgaccatatgtgcacaagatccttgtggtcattgaacca
ttgttgattgatgaagattactatgctagagtggaaggtcgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgagtatgtccgtaacacgacagctagagcttttgctgttgtagcctctgccctgggc
attccttcattgttgcccttcttaaaagccgtgtgtaaaagcaagaagtcctggcaagcg
agacacactggtattaagattgtacagcagatagctattcttatgggctgtgccatcttg
ccacatctcagaagtttagttgaaatcatcgaacatggtcttgtggatgagcaacagaaa
gttcggaccattagcgctttggccattgctgccttggctgaagcagcaactccatatggt
atcgaatcttttgattctgtgttaaagcctctgtggaagggtatccgccaacacagagga
aagggtttggctgctttcttaaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagaatttcaatctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtgaagcagtgttgtggaacagatggt
gtagaagcaaactacattaaaacagagattcttcctcctttttttaaacacttctggcaa
cacagaatggctttggacagaagaaattaccgacagttagttgatactactgtggagttg
gcaaacaaagtaggtgcggcagaaattatatccagaattgtggatgatctgaaagatgaa
gctgaacagtacagaaaaatggtgatggagacaattgagaaaattatgggcaacttggga
gcagcagatattgatcataaacttgaagaacagctgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaatggcttcggcacagtggtcaatgct
cttggcaaacgagtcaaaccttacttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatcagcaaaagtcaggcaacaggcagctgacttgatctctcgaactgctgtt
gtcatgaagacttgtcaagaggaaaagttgatggggcacttgggtgttgttttgtatgaa
tatttgggtgaagagtaccctgaagtattgggcagcattctgggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctcctgcctagactc
acccccatcttaaagaacaggcatgaaaaagtacaagaaaattgtattgatcttgttgga
cgtattgctgacaggggagctgagtatgtgtctgcaagagaatggatgaggatttgcttt
gaacttctggagctcttaaaagctcacaaaaaagctattcgtagagccacagtcaacaca
tttggctacattgcaaaggccattggccctcatgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagagtttgtaccactgtagcaatagctattgtcgcc
gaaacatgttcacccttcacggtactacctgccttaatgaatgaatacagagttcctgag
ctgaatgttcaaaatggagtgttaaaatcactttccttcttgtttgaatatattggtgaa
atgggaaaggactacatatatgctgtaacaccattacttgaagatgctttaatggatagg
gatcttgtacacaggcagacggctagtgcggtggtgcaacacatgtcacttggggtttat
ggatttggttgtgaagattcactgaatcacttgttgaactatgtatggcccaatgtgttt
gagacatctccccatgtaattcaggcagttatgggagccctggagggcctgagagttgct
attggaccctgtagaatgttgcagtattgtttacagggtttgtttcacccggcccggaaa
gtcagagacgtgtattggaaaatttacaactccatctacattggttcacaggatgcgctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (112)   
   KEGG ORTHOLOGY (1)   
   RefGene (106)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (11)   
   UniProt (2)   
   RefSeq(pep) (9)   
DNA sequence (21)   
   RefSeq(nuc) (21)   
Protein domain (8)   
   Pfam (8)   
All databases (157)   

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