KEGG   Citrobacter farmeri: CI104_06315
Entry
CI104_06315       CDS       T05012                                 
Name
(GenBank) tRNA 4-thiouridine(8) synthase ThiI
  KO
K03151  tRNA uracil 4-sulfurtransferase [EC:2.8.1.4]
Organism
cfar  Citrobacter farmeri
Pathway
cfar00730  Thiamine metabolism
cfar01100  Metabolic pathways
cfar01240  Biosynthesis of cofactors
cfar04122  Sulfur relay system
Module
cfar_M00127  Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:cfar00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00730 Thiamine metabolism
    CI104_06315
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04122 Sulfur relay system
    CI104_06315
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:cfar03016]
    CI104_06315
Enzymes [BR:cfar01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.1  Sulfurtransferases
    2.8.1.4  tRNA uracil 4-sulfurtransferase
     CI104_06315
Transfer RNA biogenesis [BR:cfar03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    CI104_06315
SSDB
Motif
Pfam: ThiI THUMP QueC Diphthami_syn_2 Rhodanese tRNA_Me_trans
Other DBs
NCBI-ProteinID: AST78724
Position
1285151..1286599
AA seq 482 aa
MKFIIKLFPEITIKSQSVRLRFIKMLTGNIRNVLKHYDETLAVVRHWDNIEVRAKDENQR
LAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALAQYRDRLEGKTFCVRVKRRGKHEFS
SIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLLLIKGRYEGIGGFPIGTQEDV
LSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFV
AINFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVAERYGVQALVTGEALGQVSSQTLTN
LRLIDNVSDTLILRPLISYDKEHIINLARQIGTEDFARTMPEYCGVISKSPTVKAIKAKI
EAEEENFDFSILEKVVEEASNVDIREIAQQTQQDVVEVETVSGFGPNDVILDIRAIDEQD
DKPLKVEGVEVVSLPFYKLSTQFGDLDQNKTWLLWCERGVMSRLQALYLREQGFENVKVY
RP
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgaagtttatcattaaattgttcccggaaattaccatcaaaagccaatctgtgcgtttg
cgctttataaaaatgctgaccgggaacattcgtaacgttttaaagcactatgatgagacc
ctcgccgttgtccgccactgggataacatcgaagttcgcgcgaaagatgaaaaccagcgt
ctggcgatccgcgacgcgctgacccgcatcccagggattcaccacattctcgaagtcgaa
gacgtgccgtttaccgacatgcacgatattttcgagaaggcgctggcgcaataccgcgat
cggctggaaggtaagaccttctgcgtgcgcgttaaacgtcgcggtaaacacgagtttagc
tctatcgacgtggaacgttacgtgggcggcggtttaaaccagcacattgaatcggcgcgc
gtgaagctgaccaacccggatgtgactgttcatctggaagtggaagatgatcgtctgctg
ctcattaaagggcgttacgaagggatcggtggtttcccgatcggtactcaggaagatgta
ctctcgctgatctccggcggtttcgactccggggtttccagctatatgctgatgcgtcgc
ggctgccgcgttcactactgcttctttaatctcggcggtgcggcgcatgaaatcggcgtt
cgtcaagtggcgcactatctgtggaaccgcttcggcagctcgcatcgcgtgcgctttgtc
gccatcaattttgagccagtggtcggcgagatcctcgagaaagtcgatgacggtcagatg
ggtgtggtgctcaaacgtatgatggttcgtgcggcgtcgaaagtggcggagcgttatggc
gtgcaggcgctggtcaccggcgaagcgctgggccaggtttccagccagacgctgaccaat
ctgcgtctgatcgataacgtctccgatacgctgatcctgcgtccgctgatttcttacgat
aaagagcacatcatcaatctggcgcgccagattgggactgaagactttgcccgcaccatg
ccggaatactgcggcgtgatttcaaaaagcccgacggtgaaagccatcaaggcgaagatt
gaagcagaagaagagaactttgacttcagcatcctcgagaaggtggttgaagaagcaagc
aatgtggatattcgcgaaattgcgcagcaaacgcagcaggacgtggtggaagtcgaaacc
gtcagtggttttggtccgaacgacgtgattctggatatccgcgctatcgacgagcaggat
gataagccgctgaaggtggaaggcgtggaggtggtttcactgccgttctacaagctgagc
acgcaattcggcgatctcgaccagaataaaacctggctgctgtggtgcgagcgcggcgtg
atgagccgattacaagcgctgtatctgcgcgagcagggctttgaaaatgtgaaggtatat
cgcccgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (28)   

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