KEGG   Cricetulus griseus (Chinese hamster): 100758820
Entry
100758820         CDS       T02813                                 
Symbol
Snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase isoform X2
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cge00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100758820 (Snrnp200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cge03041]
    100758820 (Snrnp200)
Enzymes [BR:cge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100758820 (Snrnp200)
Spliceosome [BR:cge03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    100758820 (Snrnp200)
 Complex C
   U5 SnRNP specific factors
    100758820 (Snrnp200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 DUF603
Other DBs
NCBI-GeneID: 100758820
NCBI-ProteinID: XP_027277706
UniProt: A0A8C2MWE0
Position
6:complement(51340407..51370502)
AA seq 2136 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRREIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
GHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggatgtgactgcccgcagtctgcagtacgagtacaaggcgaactcaaatcttgtg
ctccaagctgaccgctcacttattgaccggacccgccgggatgaaccgacaggagaggtt
ctgtccctggttgggaagttggagggaactcggatgggagataaggctcaacgcaccaaa
ccacagatgcaggaggaaagacgggccaagagaagaaagcgtgatgaggaccggcatgac
atcaacaagatgaaaggttatacgctgctgtcagagggcattgatgaaatggtgggcatc
atctataagcccaaaactaaggagacgcgagagacctatgaggtgctgctcagctttatc
caggctgctcttggagaccagcctcgtgatatcctttgtggggcggctgatgaagttctg
gctgtcctgaagaatgaaaagcttcgagataaggagagaagaagggagattgacttgctg
cttggtcagacagatgataccagataccatgtgctagtgaatctgggcaagaagatcaca
gactatggtggagacaaggagatccagaatatggatgacaacattgatgagacctatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgatgaggatgtgtatggggaagtt
cgagaagaagcttctgatgatgacatggaaggggatgaggctgttgtgcgctgcaccctc
tcagctaatcttgtagcctcaggagaactgatgagttcgaagaagaaagatttacaccct
cgggatattgatgctttttggctgcagcgacagctcagtcgtttctatgatgatgccatt
gtgtcgcagaagaaggcagatgaggtgttggaaattttgaagacagcaagtgatgaccga
gaatgtgagaaccaactggttctgctccttggtttcaacacttttgactttattaaagtg
ttgcgacagcacaggatgatgattttatactgtaccttgttggccagtgctcagagtgaa
gctgaaaaggaaaggatcatgggaaagatggaagctgacccagagctttccaagttcctc
tatcagctgcatgagactgagaaggaagacctgatcagagaagaaagatcccggagagag
agagtccgtcagtcccgaatggacacagatctggagaccatggatttagaccagggagga
gaagctctggctccacggcaggttctggatttggaggaccttgtttttacacaaggaagc
cacttcatggccaacaaacgatgccagcttcctgatggatccttccgacgccagcgtaag
ggctatgaagaggtgcatgtgcctgctttgaagcccaagccctttggctcagaagaacaa
ctgcttcctgtggagaagctgccaaagtatgcccaggcaggatttgagggtttcaaaaca
ctgaaccggatccagagtaaactctaccgtgctgccctggagacagatgagaatctgctg
ctgtgtgctcctactggtgctgggaagaccaatgtggccctgatgtgtatgcttcgagag
atagggaaacacattaacatggatggcactatcaatgtggatgacttcaagatcatctac
atagctcctatgcggtccctggtgcaggagatggtgggcagttttggaaagcgcctggcc
acatacggcatcactgttgctgagctgactggcgatcaccagctgtgcaaggaggagatc
agtgccacccagatcatcgtgtgcacccctgagaagtgggacatcatcactcgcaagggc
ggggagcgcacctacacccagctggtgcggctcgtcgtcctggatgagatccatcttcta
catgatgacagaggtcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaagatgtccgactcattggtctcagtgctaccctccccaactatgaagat
gtggccacctttctgcgtgttgaccctgccaagggcctcttctactttgacaacagcttc
cgcccagtgcctctggaacagacatatgtgggcatcacagagaagaaggctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtccactctcggaaagaaactgggaagactgccagggcaatccgtgac
atgtgcctggaaaaggacaccttgggtctgtttcttcgagagggttctgcctccactgaa
gtccttcgtacagaagcagaacagtgcaagaacttggagctgaaggatcttttgccttac
ggctttgctattcatcatgcaggcatgaccagagttgaccgaacacttgtagaggatctt
tttgctgacaaacatattcaggttttagtttccacagcaactctggcttggggtgtaaat
cttcctgcacatacagtcatcatcaaaggcacccaggtgtacagtccagagaaggggcgt
tggacagagctgggagcgctggatatcctgcagatgctgggtcgtgctggacgacctcag
tatgacaccaagggtgaaggtatactcatcacatctcatggagagctacagtactacctg
tccctcctcaaccagcaacttcctattgagagccaaatggtatcaaagctgcctgacatg
ctcaatgcggaaattgtgctggggaacgtccagaacgcaaaggatgcagtgaactggctg
ggctacgcctacctgtacatccgaatgctccggtccccaaccctctatggcatctctcat
gatgacctcaagggagatcccttgctggaccagcgccgactagatcttgtacacactgct
gccttgatgctggacaagaacaatctggtcaagtatgacaagaagacaggcaactttcag
gtaacagaacttggccggatagctagtcactactacatcaccaatgatactgtgcagacc
tacaaccagctcctgaagcccactctgagcgagattgaacttttccgagtgttctccttg
tcctcagagttcaagaacatcactgtgagagaggaggagaagctggagctgcagaagttg
ctggagagggtgcccatccctgtaaaggagagcattgaagaacccagtgctaagatcaac
gtgcttctccaagccttcatctcacagctgaaactggagggctttgcactgatggctgac
atggtgtatgtgacacagtcggctggccggttgatgcgtgcaatcttcgaaattgtcctg
aaccgaggttgggcacagcttacagataagaccctgaatctctgcaagatgattgacaaa
cgcatgtggcagtctatgtgtcctcttcgccagttccgtaaacttcctgaggaagtagtg
aagaagatcgagaagaaaaacttcccctttgagcggctgtatgacttgaatcataatgag
ataggtgagcttatacgaatgccgaagatggggaagaccatccacaagtatgtgcatctc
ttccccaagttggagttgtcagtgcacctgcagcctatcacacgctccaccctgaaagtg
gaactgacgatcacaccagatttccagtgggatgaaaaggtccatggttcgtcggaggca
ttttggattctggtggaggatgtggacagtgaagtgattctgcaccatgaatatttccta
ctgaaggccaagtatgcccaggatgagcacctcatcacattcttcgtcccagtctttgaa
ccactgccccctcagtacttcatccgagtggtttctgaccgctggctctcttgtgagacc
cagctgcctgtctctttccggcacctgatcctaccagagaagtacccacctccaactgaa
ctgttggacctgcagccattgcccgtatccgctctaagaaacagtgcttttgagagcctt
taccaagataaatttcctttcttcaatcctatccagactcaagtttttaacaccgtgtac
aacagtgatgataacgtatttgtgggggcccccacgggtagcgggaagaccatctgtgca
gagtttgccatcctccggatgctgctgcagaattctgagggacgctgtgtctacattact
cccatggaggctctggcagagcaggtgtacatggactggtatgagaagtttcaagaccgg
ctcaacaagaaggtggtgctgctgacgggggagacgagcacagacctgaagcttctgggc
aaaggaaacatcatcatcagcacccccgagaagtgggacatcctttcccggaggtggaag
cagcgcaagaatgtccagaacattaacctctttgtggtggatgaggtccacctgattggg
ggcgagaatgggcctgtgttggaagtgatctgttcccggatgcgatacatctcctcccag
atcgagcggcccattcgcattgtggcacttagctcatcactctccaacgccaaggatgtg
gctcactggctaggctgcagtgccacctccaccttcaacttccaccctaatgtgcgcccc
gtaccgttggaactgcatatccagggcttcaacatcagccatacacagactcgcctgctg
tctatggccaagcccgtgtaccatgctatcaccaaacactcacccaagaagcctgtcatc
gtttttgtcccatctcggaagcagacccgcctcactgcaatagacattctcactacctgt
gcagcagacatccaacggcagaggttcttgcactgtactgaaaaagatctgatcccttac
ttggagaagctaagtgacagcacgctcaaggaaacactgttaaatggggtgggctactta
catgaaggactgagccccatggagaggcgcctggtagagcagctcttcagctcaggggct
atccaggtggtggtggcttctcgaagtctctgctggggtatgaatgttgctgctcatcta
gtgatcatcatggatactcagtactacaatggcaagatccatgcctatgtggactaccct
atctatgacgtgcttcagatggtgggtcatgccaaccgtcccctgcaggatgatgagggg
cgctgtgtcatcatgtgtcaaggctctaaaaaggattttttcaaaaagtttttatatgag
ccattgccggtagagtctcatttggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccattgagaacaagcaggatgctgtggactacctcacctggacctttctg
tatcgccggatgacacagaaccccaattactacaaccttcagggcatatcccatcgtcat
ttgtctgaccacttgtcagagctggtggaacagacccttagtgacctggagcagtccaag
tgcatcagcattgaggatgagatggatgtggcgcctctgaatctgggcatgattgctgcc
tactattacataaactacaccaccattgagctcttcagcatgtctctgaatgctaaaacc
aaggttcgaggacttattgagattatttccaacgcggcagagtatgagaacattccaatc
aggcatcatgaagacaacctactgcgccagttggctcagaaggtcccccacaagctgaat
aatcccaagttcaatgatccacatgtgaagaccaacctgctgctgcaggctcacctgtcc
cgtatgcagctgagtgctgaactacagtcagacacagaggagatccttagtaaggcaatc
cgactcattcaggcctgtgtggatgtactctctagcaatggttggctcagccctgctctg
gcagccatggaactggctcagatggtcacccaagccatgtggtctaaggactcttatctg
aagcagttgccacacttcacctcagagcatatcaaacgttgcacagataagggagtggag
agtgtttttgacatcatggagatggaggatgaagaacggaacgcactgcttcagttgact
gacagccagattgcagatgtagcccgcttctgtaaccgctacccgaatatcgaactgtct
tatgaagtagtggataaagacagcatccgcagtggcgggccagttgtggtgctagtgcag
ctggagcgagaagaggaagtcacaggccctgttattgcaccactcttcccacagaaacgt
gaagagggctggtgggttgtgattggggatgccaagtccaacagcctcatctccatcaaa
aggctgaccctgcagcagaaagccaaggtgaagctagactttgtggccccagccacaggt
ggccacaactatactttgtacttcatgagtgatgcttacatgggatgtgaccaggagtat
aaattcagtgtggatgtgaaagaagctgagacagacagtgattcagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (20)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (11)   
   Pfam (11)   
All databases (49)   

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