KEGG   Cricetulus griseus (Chinese hamster): 100765798
Entry
100765798         CDS       T02813                                 
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X7
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
cge  Cricetulus griseus (Chinese hamster)
Pathway
cge03013  Nucleocytoplasmic transport
cge03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cge00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    100765798 (Upf1)
   03015 mRNA surveillance pathway
    100765798 (Upf1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cge03019]
    100765798 (Upf1)
Enzymes [BR:cge01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     100765798 (Upf1)
    5.6.2.5  RNA 5'-3' helicase
     100765798 (Upf1)
Messenger RNA biogenesis [BR:cge03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     100765798 (Upf1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     100765798 (Upf1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 100765798
NCBI-ProteinID: XP_027250478
UniProt: A0A9J7F8A5
Position
1
AA seq 1131 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTDLTQRPDYGDEIAIELRSSVGAPVEVTH
NFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQG
LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAV
DQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGEL
SSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECM
VPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPA
LSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNR
TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVD
AFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNH
LLSYYKEQKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVY
DRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAG
RGTPKSKTGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQM
SQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3396 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacggccccagctcgcagacgctcaccttcttggacactgaggag
gccgagctactcggcgccgacacccagggttccgagttcgagttcaccgacttcaccctt
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggtccgggcggagcg
ggcgcaggcggcgcggccggccagctcgacgcgcaagttggacctgagggcatcttgcag
aatggggctgtggatgacagtgtggccaagaccagccaactgctggctgagctgaacttt
gaggaagatgaagaagacacgtactacactaaggacctcccagtccacgcctgcagttac
tgcggaatccatgaccctgcgtgcgtggtttactgcaataccagcaaaaaatggttctgc
aatggtcgaggaaatacttctggcagccacattgtaaatcacctggtgagggctaaatgc
aaggaggtgacgcttcacaaggatgggccactgggcgagacggtgctggagtgctacaac
tgcggctgccgcaacgtcttcctgctaggcttcatccctgccaaggccgactcggtggtg
gtgttgctgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcccagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctcagagcaggaacagctacgggcacggcagatcactgcccagcagatcaacaagctg
gaggagctttggaaggaaaacccttcagccaccctggaggacctggagaaaccaggtgtg
gatgaggagcctcagcatgtgctcttgcggtacgaggatgcttaccagtaccagaacatc
tttgggcccctggtcaagctagaggctgactacgacaagaagctgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagatatg
cggctcatgcagggtgatgagatctgtctacgatacaaaggagacctagcgcccctgtgg
aaggggattggccatgtcatcaaggtccctgatacagacttaactcagcggccagattac
ggtgatgagattgctattgagctccgaagcagcgtgggtgcacccgtggaggtgacccac
aacttccaggtggattttgtgtggaagtcgacctcttttgataggatgcagagtgcattg
aagaccttcgctgtggatgagacctctgtgtcaggttacatctaccacaagctgctgggc
cacgaggtggaggatgtggtcatcaagtgccagctgccaaagcgcttcacggctcagggg
ctccccgacctcaaccactctcaggtgtacgctgtgaagaccgtgttacagagaccgctt
agtctcatccaaggccctccaggcacaggcaagaccgtgacatctgccactattgtctac
caccttgctcggcagggcaatgggcctgtgctggtatgtgccccaagtaatatcgctgtg
gaccagctcacagagaagatccaccagacaggactgaaggttgtacgcctctgtgccaag
agccgagaggccattgactcccccgtgtccttcttggctctgcacaaccagatcaggaac
atggacagcatgcctgagcttcagaagctgcagcagctgaaggatgagacgggcgaactg
tcgtccgcagatgagaagcggtaccgggcactcaaacgcacagccgagagagagctgctc
atgaacgcagatgtcatctgctgcacctgtgtgggtgctggtgacccgaggctagccaag
atgcagttccgttccatcctcattgatgaaagcacccaggccactgagcctgagtgcatg
gtgcctgtggtccttggggccaagcagctgatccttgtgggtgaccactgtcagctgggc
cccgtggtgatgtgcaagaaggcagccaaggccggactgtcgcagtcgctctttgagcgc
ctggtggtgctgggcatccggcccattcgcctgcaggtgcagtaccgcatgcaccccgcg
ctcagcgccttcccgtccaacatcttctacgagggctcattgcagaatggcgtcactgca
gcggatcgtgtcaagaagggctttgatttccagtggccacaacctgacaagcccatgttc
ttctacgtgacacagggccaggaggagatcgccagctcgggcacgtcctacctcaacagg
accgaggcagccaatgtggagaagataactacaaagctgctgaaggcaggtgccaagccg
gaccagattggcatcatcacaccctacgagggccagcgctcctacctggtgcaatatatg
cagttcagcggctccctgcacaccaagctctaccaggaagtggagattgccagtgtggac
gccttccagggacgggagaaggacttcatcatcctgtcctgcgtgcgcgccaatgagcac
cagggcatcgggttcctgaacgacccccgtcgtctcaatgtggccctcaccagagcaagg
tatggcgtgatcattgtgggtaacccaaaggcgctgtcaaagcagccgctgtggaaccac
ctgctgagctactacaaggagcagaaggcactggtggaggggccgctcaacaacctgcgt
gagagcctcatgcagttcagcaagcctcgaaagctcgtcaacaccgtcaacccgggggcc
cgcttcatgactacagccatgtatgatgcccgagaggccatcatccctggatctgtctat
gaccgcagcagccagggccggccatcaaacatgtacttccagacccacgaccagattggc
atgatcagcgcaggtcccagccatgtggctgccatgaacatccccattcccttcaacttg
gtcatgcctcccatgccgccgcctggatactttggacaggccaatgggccagctgctggc
cggggtaccccaaaaagcaagactggccgtggaggacgccagaagaaccgcttcgggctt
cctgggcccagccagaccacccttcccaacagccaggccagccaggatgtggcctcacag
cccttttcccagggcgccctcacacagggctatgtgtccatgagccaaccctcccagatg
agccagcccggcctctcccagccagaactgtcccaggacagctacctcggtgatgagttt
aaatcacagattgatgtggcactctcccaagactccacataccagggggagcgggcatac
cagcatggcggggtcaccgggctgtcccagtactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (1)   
   RefSeq(pep) (12)   
DNA sequence (16)   
   RefSeq(nuc) (12)   
   GenBank (2)   
   EMBL (2)   
Protein domain (17)   
   Pfam (17)   
All databases (79)   

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