KEGG   Cryptococcus gattii: CGB_E4670W
Entry
CGB_E4670W        CDS       T02232                                 
Name
(RefSeq) 5'-3' exonuclease involved in mRNA decay; Kem1p
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cgi  Cryptococcus gattii
Pathway
cgi03008  Ribosome biogenesis in eukaryotes
cgi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgi00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CGB_E4670W
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CGB_E4670W
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgi03019]
    CGB_E4670W
   03009 Ribosome biogenesis [BR:cgi03009]
    CGB_E4670W
   03016 Transfer RNA biogenesis [BR:cgi03016]
    CGB_E4670W
   03036 Chromosome and associated proteins [BR:cgi03036]
    CGB_E4670W
Messenger RNA biogenesis [BR:cgi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     CGB_E4670W
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     CGB_E4670W
Ribosome biogenesis [BR:cgi03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    CGB_E4670W
Transfer RNA biogenesis [BR:cgi03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    CGB_E4670W
Chromosome and associated proteins [BR:cgi03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    CGB_E4670W
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D1 XRN1_D2_D3 SH3_12
Other DBs
NCBI-GeneID: 10190594
NCBI-ProteinID: XP_003194362
UniProt: E6R7B0
Position
E:complement(join(923307..924299,924408..924884,924935..925072,925127..925245,925296..925934,925990..926134,926190..926311,926367..926520,926574..927010,927058..927237,927287..927531,927577..927776,927821..927930,927981..928284,928332..928341,928397..928479,928538..928548,928596..928599))
AA seq 1456 aa
MGIPKFFRWISERYPLTSQLITPNSIPTFDNLYLDMNGIIHNCSHPPSSENDPHFRITEE
QMILAIFAYIDHLFTKIKPQKVFFMAIDGVAPRAKMNQQRSRRFRAGKDARDQREKAEKN
GEKLPDEKAFDSNAITPGTPFMARLSQHLKYYVRKRISEDADWRNIRVILSGHDVPGEGE
HKIQEFIRLNKAQPDYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRKSRQNT
ELANTNFFLLHLSLMREYLDLEFSSLQTQISFEYDLERIIDDFILMAIFVGNDFLPHLPD
LHINEGALERIWGMYKDILPTIDGYLNEHGTISLPRLQLLLDKLAEFEVKRFEDDLVDQV
HFSGNHTKDTMVIEKARKKGRKVITKYQQKVLNQLRSFIEKQQNQPNPTHRLELINTQDK
RDNAFVQELADELHLHTTWDEVDDYGQSLIVCTFNMEGVSQDGSADGNEEDEDWESDGME
DEGKLAVQRVFRNWSKAAVVDTYPEDVEKSMDEKLKEAMDGIKRQYYHDKLEINYNDPAQ
MQDLVHHYIEGLQWILNYYYKGVSSWGWFYKYHYSPRITDLKGVADMKFEFDYGKPFTPF
QQLMGVLPVDSMEHVPLAYRDLMYEETSPIIDFYPRNFELDMNGKKQDWEAVVKIPFIDQ
NRLLKAMAARDVRLTPEERERNKSGVLSTEFVYDPEIDENYPSSFPGVFPELTRSHCRAS
PFNLPVLGGDIQLIFGLVEGVQLGVSALAGFPSLNTLPHNGILDYHGVNVFQSESKNPSM
VITIIGKDELPKTSEIARNVLGQRTFHSWPYLQEGIVAAVSDDMFKYTLQQVGKSLRVVH
MPHQDAVKWRRQADHVERHYSRRYGVIIGGVEVLLHIRPLKGLKHLDNGALVKDYEAPEK
EIVQAYQMAVSQVTFEDERFLERAPPDLKVDFPVGERVLFLGDMHYGLAAQVSAINEEAQ
TLSVILAYFEEETEETFKFTKAVAHRPTGKWWPSPILCRRLGISALALSRITSTLLVQLN
DGSKTNIGLSLKFESRGLKVLGYSKRNDRGWEFSEKTAQVLEAYKKAFPEVFKHLENRGG
DLVKSKELCPAAEDPDAVIKGMKKWLKDEGLNDLESVSLFADQLEAKTFQSIKKKRLDNV
PRQTLLKPSQAIYRLQGQVFEPGHRVVMVQDPAAGGVPTGMRGVVVGLGMRTIDVIWDNG
FMGGSTLQGKCSPYRGSTVPFSSCLNLTRPQFTVSERAGPKPVPQNVFRPQLGPRPAVPM
QHYQPSVPGRQQTAITTPHILHKPKTVHSVQSTTVAGNNGHLKYSGVAKGVRPQPIQQQP
VSHRDQLSNLLGGLRLGTGPVVNDSGGSGHITQAQAQGNLPVVYSHASAHQSVSTHPHIQ
GKTPNMNNKPSLSAARGRGAANGAPFSHRGAHNGVPAFAHGGAPNGAPRGRGGRGGGHRG
RGRGRGNGGSSAAIQE
NT seq 4371 nt   +upstreamnt  +downstreamnt
atgggtatcccaaagtttttcaggtggatctcagagaggtatcctcttacctctcagttg
atcacacccaactctatccccacattcgataatctctatctggatatgaacggtatcatt
cacaactgctcccaccccccgtcgtctgagaacgacccgcattttcgaatcaccgaagag
cagatgattctggccattttcgcctatatcgaccatctgttcaccaagataaaacctcaa
aaagtatttttcatggctattgatggtgtagctcctcgagcaaagatgaatcagcagcgt
agccgaaggttcagggccggtaaggacgctagagaccaaagggaaaaggcggaaaagaat
ggagagaagctgcctgatgaaaaggcatttgactctaatgcaattacgccaggtacacct
ttcatggcgaggctgtcgcaacacctcaagtactatgtgcgaaaaagaatttctgaagac
gccgattggcgtaacatcagagttattcttagtggtcacgatgtccccggagagggtgaa
cacaagatccaagaattcatccgactgaacaaggctcagccggattacaatcctaacacc
aggcattgcctttacggacttgatgccgatttgatcatgttgggtctattgagtcatgac
ccccatttctgtcttttgcgtgaggaagtgacttttggacgaaagtctagacagaacact
gaactcgcgaacaccaattttttcctactccatctttccctcatgcgagagtatctcgac
cttgagttctcatctctccagacgcagatctccttcgagtacgatctggaacgtattatt
gatgatttcatcctgatggcaatctttgttgggaatgatttcttgcctcatttgccggat
ttacatatcaacgaaggtgccttggaaagaatatgggggatgtataaagacattttgcct
acaattgacggatatcttaatgagcatggcacgatctcattgccaagactccaacttctg
cttgacaaattggccgaatttgaggtcaagaggttcgaagatgaccttgtggatcaggtt
cacttttctggtaaccacactaaagacacaatggtgattgagaaggctagaaagaagggc
cgcaaggtcataaccaaatatcaacaaaaagtactgaaccagctgcgcagctttatcgag
aagcagcaaaatcagcccaaccccactcaccgacttgagcttatcaacactcaggacaag
cgcgacaacgctttcgtccaagagcttgcagatgagttacacctgcacacgacatgggac
gaagtcgatgattacggtcaatccttgattgtctgcacgttcaacatggaaggtgtgagt
caagatggaagtgcggacgggaacgaggaagatgaagattgggaaagcgatggcatggag
gatgaaggcaagctagcagttcaaagagtcttccgtaactggagcaaagctgcagtcgtc
gatacttatccggaagatgttgagaagtcgatggacgagaagctgaaggaagccatggat
ggtatcaagaggcagtattatcacgataaacttgagatcaattacaacgacccagctcaa
atgcaggaccttgtacaccactatatcgaaggacttcaatggatcctcaattattactac
aagggtgtttccagttggggctggttttacaaatatcactactctccccgtatcactgat
ttgaagggcgttgctgatatgaagttcgagtttgactatggcaaaccgttcactcctttc
caacaacttatgggtgtgttgcctgtagatagtatggagcatgttccattggcgtatagg
gacctcatgtacgaagagacctccccgattatcgacttctatccccgcaactttgaattg
gacatgaacggcaagaaacaagattgggaggccgtggtaaagatcccgttcattgatcaa
aacagattgttgaaggccatggctgctcgtgacgttcgcctcactcccgaggagagagag
aggaataagagcggcgtgctcagtactgaatttgtttacgatcccgaaatcgatgaaaat
tacccctcatctttccccggtgttttccctgagctcactcggagccattgccgtgcttcc
ccatttaatctcccagttcttggaggcgacatccaactcatttttggtctcgttgaaggt
gttcaacttggagtttccgcacttgctggcttcccgtctctcaacactcttccccacaat
ggcatccttgactaccatggtgtcaatgtcttccaatctgaaagcaagaatccttctatg
gtgatcaccatcatcggcaaggatgaactccctaagacttctgagatagctcgaaacgtc
ctcggccaaaggactttccactcttggccttatctgcaggaaggtatcgtcgctgctgtt
tcagacgatatgttcaagtacaccttgcagcaagttggcaaatctcttcgagttgtacat
atgccccaccaggatgcggtcaagtggaggcgacaggcagaccatgtggaaaggcattat
tcaaggaggtacggtgtgattattgggggtgtggaagtactgttgcatatcagaccgctt
aagggcttgaaacaccttgacaacggtgcacttgtcaaagactacgaagcaccggaaaag
gaaattgttcaagcataccagatggctgtttcacaggtcactttcgaagatgaacgtttc
ctggaacgagctccacctgacttgaaggttgacttccctgttggagaaagagttcttttc
ctcggcgacatgcactacggtctcgcagcgcaggtctcggcgatcaatgaggaagctcag
acgttaagcgtgattctggcatactttgaagaggaaacagaggaaaccttcaaattcacg
aaggctgtcgctcaccgaccaacgggcaagtggtggccttcaccaattctgtgccgtcgg
cttggtatctccgccctcgctctttctcgcatcacatctactttgctcgttcagcttaat
gatggctcaaagaccaacattggactttctctcaagttcgagtctcgcggattgaaagtt
ctcggttactcgaagagaaatgaccgaggctgggagttcagcgagaagacagctcaagta
ctggaggcgtacaagaaggctttccctgaggtgttcaagcatctggaaaacaggggagga
gacctggtcaaaagcaaagaactgtgccccgctgcggaggaccctgatgctgttattaag
ggcatgaaaaagtggttgaaggatgaaggattgaacgatttggagtcagtgtcgttattt
gccgaccagcttgaagcgaaaacctttcaatcaattaagaaaaagcgtttggacaatgtt
cctcgccagactctattgaagccctctcaagccatttatcgacttcagggtcaagttttc
gaacctggccaccgagtcgttatggtacaagaccccgccgcaggaggcgtgcccactggt
atgaggggtgttgtggtcggtcttggaatgaggaccatcgatgtaatctgggacaatggt
ttcatgggtggctctactctccaggggaagtgttcgccttaccgtgggtcgactgtgcca
ttctcatcctgcctcaacttaactcgtccccaattcaccgtctccgagagagccggcccg
aagcccgttcctcaaaatgtctttcgacctcaacttgggccccgccctgctgtgcccatg
cagcattaccagccttcagtgcctggccgtcaacaaactgcgataactacacctcacatc
ctgcataaacccaagactgtccactccgttcaaagtaccaccgttgctggtaacaacggc
catctgaagtatagcggcgtggcgaaaggtgtccgacctcagcctattcagcaacagccc
gttagtcaccgagatcaattatccaacttgctgggaggtttgcgattgggaaccggtcct
gtggtcaatgacagtggtggttccggtcacatcactcaggctcaagctcaggggaacctt
ccagtggtctattcccatgcttctgctcaccagtcggtatccacccatccccatattcag
ggaaaaacaccaaacatgaacaacaagcccagtctcagtgccgccaggggaaggggcgcc
gccaacggtgcacccttctctcatcgaggtgcgcacaatggtgtgcctgcgtttgctcac
ggaggcgctccaaacggtgcaccaagggggagaggggggagagggggtggtcacagagga
agaggcaggggccgtggaaatggtggtagtagtgcagcaatccaggagtag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system