KEGG   Corynebacterium glutamicum MB001: cgp_1307
Entry
cgp_1307          CDS       T02791                                 
Name
(GenBank) DNA/RNA helicase, superfamily II
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
cgm  Corynebacterium glutamicum MB001
Pathway
cgm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cgm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    cgp_1307
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cgm03019]
    cgp_1307
   03009 Ribosome biogenesis [BR:cgm03009]
    cgp_1307
Enzymes [BR:cgm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     cgp_1307
Messenger RNA biogenesis [BR:cgm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     cgp_1307
Ribosome biogenesis [BR:cgm03009]
 Prokaryotic type
  rRNA helicases
   cgp_1307
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII UvrA_inter CMS1 adh_short
Other DBs
NCBI-ProteinID: AGT05146
Position
1212830..1215028
AA seq 732 aa
MSNTENVNGDVEQPNNVISSESQETPQGDSASADFALETPTNTVEDAPASEGSEEITRVA
DTSEDADSADADNASNVINENEDSSEGANQPSNESSSTEAKSGFDALGLPERVLDAVRKV
GYETPSPIQAQTIPILMEGQDVVGLAQTGTGKTAAFALPILARIDKSVRSPQALVLAPTR
ELALQVADSFQSFADHVGGLNVLPIYGGQAYGIQLSGLRRGAHIVVGTPGRIIDHLEKGS
LDISGLRFLVLDEADEMLNMGFQEDVERILEDTPDEKQVALFSATMPNGIRRLSKQYLNN
PAEITVKSETRTNTNITQRFLNVAHRNKMDALTRILEVTEFEAMIMFVRTKHETEEVAEK
LRARGFSAAAINGDIAQAQRERTVDQLKDGRLDILVATDVAARGLDVERISHVLNFDIPN
DTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERATNAPLHEMELPTVDQVNDFRK
VKFADSITKSLEDKQMDLFRTLVKEYSQANDVPLEDIAAALATQAQSGDFLLKELPPERR
ERNDRRRDRDFDDRGGRGRDRDRGDRGDRGSRFDRDDENLATYRLAVGKRQHIRPGAIVG
ALANEGGLNSKDFGRITIAADHTLVELPKDLPQSVLDNLRDTRISGQLINIERDSGGRPP
RRFERDDRGGRGGFRGDRDDRGGRGRDRDDRGSRGGFRGGRDRDDRGGRGGFRGRDDRGD
RGGRGGYRGGRD
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgagtaataccgagaacgtcaacggcgacgtagaacagccgaataacgtcatttcgtcg
gaatctcaggaaaccccgcagggtgactcagcatcagctgacttcgctctcgaaacccca
accaacactgttgaagatgcaccagcatctgagggtagcgaagagatcaccagggttgcg
gatacttctgaggacgccgactctgcagatgcagacaacgcgagcaatgtaatcaatgag
aatgaggactcctcggaaggtgctaaccagccttcaaacgagtcatcctctacggaagcc
aaatccggcttcgatgcactcggactgccagagcgtgttcttgacgctgtgcgcaaggtg
ggttacgaaactccttccccaattcaggcacaaaccatcccaatcctcatggagggccag
gatgttgttggtctagcacagaccggtaccggtaagactgcagctttcgcgctgccaatc
cttgcccgtattgacaagtccgtgcgcagcccacaggcacttgtgcttgcccctacccgt
gagctggcacttcaggttgctgactccttccaatccttcgctgaccacgtcggtggcctg
aacgttctgccaatctatggtggacaggcttacggcattcagctctctggcctgcgtcgt
ggcgctcacatcgtcgtgggtaccccaggccgaatcatcgatcacctcgaaaagggctcc
ctggatatctccggactgcgcttcctcgtgctcgatgaagcagacgagatgctgaacatg
ggcttccaggaagatgtcgagcgcatcctcgaggacaccccagacgagaagcaggttgca
ctattctccgcaacgatgccaaacggcattcgtcgcctgtccaagcagtacctgaacaac
cctgctgaaatcaccgttaagtccgagaccaggactaacaccaacatcacccagcgcttc
ctcaacgttgcacaccgcaacaagatggatgcactgacccgtattctcgaggtcaccgag
tttgaagcaatgatcatgttcgtgcgcaccaagcacgaaactgaagaagttgctgaaaag
ctccgtgcacgcggattctccgcagcagccatcaacggcgacattgctcaggcacagcgt
gagcgcaccgtcgaccagctgaaggacggccgcctggacatcctcgttgcaaccgacgtt
gcagcccgtggtcttgacgttgagcgcatctcccacgtgcttaacttcgacattccaaac
gacaccgagtcctacgttcaccgcatcggccgcaccggccgtgcaggacgtaccggcgag
gcaatcctgttcgtgaccccacgtgagcgtcgtatgcttcgctccatcgagcgcgcaacc
aacgcaccactgcacgaaatggaactgccaaccgtcgatcaggtcaacgacttccgcaag
gtcaagttcgctgactccatcaccaagtccctcgaggacaagcagatggacctgttccgc
accctggtcaaggaatactcccaggccaacgacgttcctctagaggacatcgcagcggca
ctggcaacccaggcacagtccggcgacttcctgctcaaggagctcccaccagagcgccgt
gagcgcaacgaccgccgtcgtgaccgtgacttcgacgaccgtggtggacgtggacgcgac
cgtgaccgtggcgaccgcggagatcgtggctcacgcttcgaccgcgacgacgagaacctg
gcaacctaccgcctcgcagtgggcaagcgccagcacatccgcccaggcgcaatcgttggt
gcacttgccaacgaaggtggcctgaactccaaggacttcggccgcatcaccatcgcagcc
gaccacaccctggttgaactgccaaaggatctcccacagagcgttcttgacaacctgcgc
gacacccgcatctccggccagctcatcaacatagaacgcgactccggtggacgcccacca
cgccgcttcgagcgcgatgaccgtggcggacgcggcggattccgcggcgaccgtgatgac
cgcggtggacgtggacgtgaccgtgacgatcgtggaagccgtggaggtttccgcggtgga
cgtgaccgtgatgatcgtggcggacgcggtggattccgcggacgcgacgaccgcggagac
cgtggtggccgtggcggttaccgtggcggacgcgactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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