KEGG   Corynebacterium glyciniphilum: CGLY_06815
Entry
CGLY_06815        CDS       T03073                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cgy  Corynebacterium glyciniphilum
Pathway
cgy03030  DNA replication
cgy03410  Base excision repair
cgy03420  Nucleotide excision repair
cgy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cgy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CGLY_06815 (ligA)
   03410 Base excision repair
    CGLY_06815 (ligA)
   03420 Nucleotide excision repair
    CGLY_06815 (ligA)
   03430 Mismatch repair
    CGLY_06815 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cgy03032]
    CGLY_06815 (ligA)
   03400 DNA repair and recombination proteins [BR:cgy03400]
    CGLY_06815 (ligA)
Enzymes [BR:cgy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CGLY_06815 (ligA)
DNA replication proteins [BR:cgy03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CGLY_06815 (ligA)
DNA repair and recombination proteins [BR:cgy03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CGLY_06815 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CGLY_06815 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     CGLY_06815 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CGLY_06815 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 BRCT_2
Other DBs
NCBI-ProteinID: AHW63808
UniProt: X5DL51
Position
complement(1440588..1442813)
AA seq 741 aa
MQTARSPTPACSGAHHISPSYCEDTLTYRQNNCPCTGWSSPVDAALTTLATVTETPTETS
PETPETPEDRWNRLAADIRRHRELYYYEAPEVSDADFDAMMRELQELEEAHPEAVQGPSP
TEEVAPSPENSPFRNVDHREPMLSLDNVFSLDEMREWLTRTPAPTYLTELKIDGASIDLL
YIDGRLNLALTRGDGVTGEDVTHNARTLDDIPDVLTGTDEFPVPSLVEIRGEIFITVEDF
ATMNADRQAEGKKMFANPRNAAAGAMRQKNPEETAKRPLRLICHGIGAREGFEPASQHDG
YRAIEAWGLPVSPYTRQVHSADEVLDAVTYWGEHRHDAAHEMDGLVVKIDDVTEQQNLGS
TSRAPRWAIAYKYPPEEAVTTVESIRVGIGRTGRATPYAVMTPTYVAGSTVTMATLHNAT
EAHRKGVRLGDRAMIRKAGEVIPEVLGPVETARTGDEREYVYPSLCPECGTPLSPTKEGD
ADWRCPNTRYCPGQLQNRLNYLAGRGAFDIDALGERAAHDLIASGVLPDEGHLFSLTAET
LATTSAYTTKAGTLNKQGKVLLDNLEEAKGVDLWRVITALSIRHVGPTAAKALAANLQSI
PVIDKTSVEDMAEIDGVGGIIAQSVKDWFAVDWHREIVDAWAAAGVRMEQIVEASELPEQ
TLAGLTVVVTGSLAHFDRTEAKEAVESRGGKASGSVSKKTDFVVAGEKAGSKLAKAEDLG
VPVLDEAGFEKLLASGPDAVR
NT seq 2226 nt   +upstreamnt  +downstreamnt
atgcagaccgcaagaagccccacccccgcctgcagtggggcgcatcacatcagcccctcc
tactgtgaagacacactcacataccgacagaacaattgcccatgcaccggatggagctcc
ccagtcgacgctgcgctcactacactggcgacggtgactgagacaccgactgagacatcg
ccagagacgcctgaaacgcctgaggaccgttggaaccgtctggccgctgacatccgccga
caccgggagctgtactactacgaggcacccgaagtctccgacgccgacttcgacgcgatg
atgcgcgagttgcaggagctggaagaagctcatcctgaagccgtgcagggaccgagccct
accgaggaagtcgctccgtccccggagaactcaccgttccgcaacgtcgaccaccgggag
ccgatgctcagcctcgacaacgtcttcagcctcgacgaaatgcgggagtggctgaccagg
acccccgcaccgacctatcttaccgagctgaagatcgatggtgcttcgattgatcttctg
tacatcgacggccgtctgaacctcgctctcacccgaggtgacggtgtcaccggtgaagat
gtcacccacaacgcgcggacactcgatgacatccccgacgttctcaccggtaccgacgag
ttcccggtcccctctctcgtggagatcaggggagagatcttcatcactgtcgaggacttc
gcgacgatgaacgcagaccggcaggccgagggaaagaagatgttcgcgaatccccggaac
gccgcagccggcgcaatgcggcagaagaacccggaggaaacagccaaacggcccctccgt
ctgatctgccacggcatcggggccagggaaggattcgaacctgccagccagcacgacggc
taccgggcgatcgaggcgtgggggcttcccgtcagtccgtacaccaggcaggtccactcc
gccgacgaggtcctcgacgccgtcacgtactggggcgagcaccgacacgacgccgctcac
gagatggacggactcgtcgtgaagatcgacgacgtcaccgagcagcagaacctcggctcc
acaagccgcgcaccacgatgggcgatcgcctacaagtacccaccggaggaggcggtgacg
accgtggagtccatccgcgtaggtatcgggagaaccggtcgcgcgaccccgtacgcggtg
atgacacccacttatgtcgcaggttcaacggtcaccatggcaacgctgcacaacgccact
gaggcacaccgcaagggcgtccgcctcggagaccgcgcgatgatccgtaaggccggcgag
gtcattcccgaggttctgggcccggtggagacagcccgcaccggagacgaacgggagtac
gtgtatccctcactgtgtccggaatgtgggaccccgctctcccccaccaaagagggtgac
gccgactggcgctgccccaacacccggtactgccccggccaactgcagaaccggttgaac
tacctggccgggcgtggtgccttcgacattgacgcgctcggtgagcgtgccgcccacgac
ctcatcgcgtcgggggtgttgccggatgaaggccacctcttctcactcaccgcggagaca
ctggccaccacgagcgcctacaccaccaaggcagggacgctgaacaagcagggcaaggtt
ctcctcgacaatcttgaggaggcgaagggggtcgacctgtggcgggtcatcaccgcactg
tcgatccgccacgtcggccccacggctgccaaggcacttgcggcgaacctgcagtccatt
cccgtcatcgataagacgtctgtcgaggacatggccgagatcgacggggtcggtggaatc
atcgcgcagtcggtcaaggactggttcgccgttgactggcacagggaaatcgtcgatgcc
tgggcagcggccggcgtccggatggaacagatcgtggaagcgtccgagctgcccgagcag
accctcgcagggctgaccgtggtcgtcaccggatcattggcgcacttcgatcggacggag
gccaaggaagcggtggagtcgaggggaggaaaggcttccgggtctgtgtcgaaaaagacc
gacttcgtcgttgccggggagaaagcaggatcgaagctggcaaaggccgaggacctcggt
gtgccggtgctcgacgaggccggattcgagaaactgctcgcctccggaccggacgcggtg
cgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

Download RDF
DBGET integrated database retrieval system