KEGG   Clupea harengus (Atlantic herring): 105889251
Entry
105889251         CDS       T09045                                 
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
  KO
K14809  ATP-dependent RNA helicase DDX55/SPB4 [EC:5.6.2.7]
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:char03009]
    105889251 (ddx55)
Enzymes [BR:char01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105889251 (ddx55)
Ribosome biogenesis [BR:char03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    105889251 (ddx55)
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217 ResIII AAA_22 SBF_like
Other DBs
NCBI-GeneID: 105889251
NCBI-ProteinID: XP_012670504
Ensembl: ENSCHAG00000022912
UniProt: A0A6P3VG26
Position
12:complement(15653534..15658631)
AA seq 581 aa
MDNPTGKWESLPVKLNENIMQTLEELEFTHMTPVQSACIPLFMKNKDVAAEAVTGSGKTL
AFVIPILEILQRREEKLKKLQVGALIITPTRELALQISEVMGRFLHGFPQLRLILLIGGN
NPIDDVEKIKSQGANIIVATPGRLQDMFRRKADGLDLASCVKTLDVLVLDEADRLLDMGF
EASLNTILDFLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVADSNSQKTPSR
LSNYYTICRAEDKFNTLVTFLRKHKNEKQLVFFSTCACVEYFGKALEALVKKVPVLCIHG
KMDKKDKRSKIFSAFRELKSGILVCTDVMARGIDIPEVHWVLQYDPPSSASSFVHRCGRT
ARIGNHGNALVFLLPMEDTYVNFLSINQKCPLQKFPAIKNVDDVLPKLKALALSDRAIYE
KGMRAFVSCIQAYVKHECNLIFRIKDLDFAALARGFALLRMPKMPELKGKSFPTFYREPI
DTDTIRFKDKNREKHRQKKLAEQKAKPEAPRRSFIKNKSWSKQTNKKEKKKKNAAKRKRN
EGSEDEDMDELLKDTRLLKKLKKGKISNEDFDSQMTAGQDS
NT seq 1746 nt   +upstreamnt  +downstreamnt
atggataacccaactggaaaatgggagagtttgccagtaaaactgaacgagaacattatg
cagactcttgaagagttggaatttacacacatgactcccgtccagtccgcttgcatacct
ctcttcatgaaaaataaagatgttgctgccgaagcggtgacgggcagtggaaagactctt
gctttcgtgattccgattctggagattcttcagagacgtgaggaaaagctaaagaaacta
caggttggtgcactaattatcacacccactcgagaacttgccctacaaattagtgaggtt
atgggacgtttcttgcacggatttccccagttaagactaattcttttgattggtggcaac
aatcctattgatgatgtggagaagattaagagccagggggcaaatatcattgtggcgact
ccgggtcgcctgcaagacatgttccgtaggaaagcagatggactagacctggccagctgt
gtaaaaactctggatgttctggttctggatgaggcagaccgcctgcttgacatgggcttt
gaagctagcctaaacaccatcctggacttcctacctaagcagcggcggacagggctgttc
tctgccactcagacacaggaactggagaagctggtgagggcggggcttcgtaaccctgtg
cgaatcacagtcaaggagaagggcgtggctgacagcaactctcagaagaccccatcaaga
ctcagcaactactacaccatatgcagagcagaagataagttcaacacactggtgactttc
ttgaggaaacacaagaatgagaagcagctggtattcttcagcacgtgtgcctgtgtggag
tactttgggaaagccctggaggctctcgtcaagaaagtccccgtcctctgcatccatggc
aagatggacaagaaggacaagcgcagcaaaatcttctcagcattccgagagctgaagagt
gggattctggtgtgcacagatgtgatggcacgaggcattgacatcccagaggtccactgg
gtgctgcaatacgaccctcccagcagtgccagctcttttgtccatcgctgtggccgaact
gcgcgcattggtaaccatggcaatgccctcgtcttcctgttgcccatggaggacacatat
gtcaacttcctgtccattaaccagaagtgccctttgcaaaaattccctgctataaagaat
gtggatgacgtcttgccaaagttgaaggccctcgctctctctgaccgtgctatctatgag
aagggcatgcgagcatttgtgtcttgcatccaggcgtacgtcaaacacgagtgtaacctc
atcttcaggatcaaagatcttgacttcgctgctttggctcgtggatttgcgcttctccgc
atgcccaagatgccggagctgaagggcaagagtttccccaccttctatcgagagccgata
gacacagacaccatccgattcaaggacaagaaccgggagaaacatagacagaagaagcta
gccgaacagaaagcgaagccagaggcacccaggagaagcttcatcaagaacaaatcctgg
tccaaacagaccaacaagaaagaaaaaaagaaaaagaatgctgccaagagaaaacggaac
gagggatctgaggatgaagacatggacgaactcctgaaggatacccgtctgctcaagaaa
ctgaagaagggtaaaatcagtaatgaggactttgatagccagatgacagcaggacaggac
tcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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