KEGG   Clupea harengus (Atlantic herring): 105898758
Entry
105898758         CDS       T09045                                 
Name
(RefSeq) cysteine protease ATG4D
  KO
K08342  cysteine protease ATG4 [EC:3.4.22.-]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04136  Autophagy - other
char04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:char00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    105898758
   04136 Autophagy - other
    105898758
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:char01002]
    105898758
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:char04131]
    105898758
   03029 Mitochondrial biogenesis [BR:char03029]
    105898758
Peptidases and inhibitors [BR:char01002]
 Cysteine peptidases
  Family C54: Aut2 peptidase family
   105898758
Membrane trafficking [BR:char04131]
 Autophagy
  Autophagosome formation proteins
   Atg8 conjugation proteins
    105898758
Mitochondrial biogenesis [BR:char03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    105898758
SSDB
Motif
Pfam: Peptidase_C54 POU2AF2
Other DBs
NCBI-GeneID: 105898758
NCBI-ProteinID: XP_012681269
Ensembl: ENSCHAG00000026457
UniProt: A0A6P8FQN3
Position
1:24567508..24576374
AA seq 465 aa
MAMNPVTPGDSPAQSDVSLLSSPGSMGSAGASEDAEKPEDRVRIKSKLVSAWNSVKYGWS
FKSKSHFNKRSPLVLLGHYYLLSYSGEREAFRRAFSSLLWLTYRKGFPQLADSTLTSDCG
WGCMLRSGQMLLAQGLLLHLLPPGWTWAASHHVTKDDLEVLSPRPSSSTSVASAECPRAR
TKSMGCSLLERGGSGSEATHRMVVSWFVDQPGCPFGLHQLVEMGKSHGKKAGDWYGPATA
AHIIRNAVAASELSDLVVYVAQDCTVYKGDIVRQCERPQHEGPRGRGAAWRSLILLVPVR
LGGDVLNPAYTECVKRLLGLECCIGIIGGKPKHSLYFVGFQDQQLVYLDPHYSQSAVDIT
QEDFPIESFHCKSARKMAFSRMDPSCTVGFYARGQHEFETLCALVSAVLNYDTNKYPMFT
FAEGQRAAEEDDARSEMSLFSEVCILSSKASHASLSSGTDDFVLL
NT seq 1398 nt   +upstreamnt  +downstreamnt
atggccatgaaccctgtgactcctggtgactcccctgctcagagtgatgtctctctcttg
tcctctccgggctccatgggctcagctggggccagcgaggacgcagagaaaccagaggac
cgggtcagaatcaaaagcaagcttgtgtctgcatggaacagtgtaaaatatggctggtct
tttaagtcaaagtcccacttcaataagaggtcacctcttgtccttctggggcactactac
ttgctaagctacagtggagagagggaggctttccgacgggccttttcctccttgctatgg
ctgacctatcgcaaaggctttccccagctggctgactccaccctcaccagtgactgtggc
tggggctgcatgctgcgcagcgggcagatgctgctggcgcaggggttgctccttcacctg
cttccaccaggatggacatgggctgcctcacaccatgtcaccaaagatgacctagaggtc
ctgtcacctcggccttcctctagcacaagcgtggcctcagcagaatgccccagagccagg
acgaagagtatgggctgcagcctgctggagaggggtggcagtgggagtgaggccacccac
aggatggtggtgtcatggttcgttgaccaaccaggttgcccattcggcctgcaccagctg
gtggagatgggcaagagccatgggaagaaggctggggactggtacggtcctgccactgct
gcccacatcattcggaacgcggtggcagcatctgagttatctgatctggtcgtgtatgtg
gcccaggactgtactgtgtacaaaggggacattgtgaggcagtgtgagcggccccagcat
gagggccccaggggccgtggagctgcgtggaggtccctcatccttctggtgcctgttcgg
cttgggggtgacgtcctcaacccagcctacaccgagtgtgtcaaaagacttctcgggtta
gagtgttgcattggaatcatcggtggcaagcccaaacactcactttattttgtcggcttc
caagatcagcagctggtgtacttagacccccactacagccagtccgcagtggacatcacc
caagaggacttccccatagagtcgtttcactgtaagtccgctcggaagatggcgttcagc
cgcatggaccccagctgcactgtgggcttctatgccagaggccagcacgagtttgagacg
ctgtgtgcgctggtcagtgcggtcctgaactacgatacaaacaagtacccaatgtttacc
tttgcggagggccagcgggcggccgaggaggacgacgcacggagtgaaatgtctctcttc
tctgaagtttgcatcctcagcagcaaggcaagccacgcgagcttgtcaagtggcacggat
gactttgtgttactatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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