KEGG   Clupea harengus (Atlantic herring): 105911373
Entry
105911373         CDS       T09045                                 
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X2
  KO
K16498  protocadherin delta 1
Organism
char  Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:char00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:char01009]
    105911373 (pcdh7b)
  09183 Protein families: signaling and cellular processes
   04515 Cell adhesion molecules [BR:char04515]
    105911373 (pcdh7b)
Protein phosphatases and associated proteins [BR:char01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     105911373 (pcdh7b)
Cell adhesion molecules [BR:char04515]
 Cadherins
  Protocadherins
   105911373 (pcdh7b)
SSDB
Motif
Pfam: Cadherin Protocadherin Cadherin_2 Mid2 LYRIC TMEM154 KIAA1549 Adeno_E3_CR2
Other DBs
NCBI-GeneID: 105911373
NCBI-ProteinID: XP_012695624
Ensembl: ENSCHAG00000003521
UniProt: A0A6P3WDJ9
Position
18:10103580..10241832
AA seq 1250 aa
MRTTGAVDYLCYLVLILQLLSQPAAKKVLRYRLAEEGPADIRIGNVAADLGIGAGSGEVT
FTLESGSEYFKIDNITGELSTNDRRIDREKLQQCQMIFDENECFIDFEVSVIGPAQSWLD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
SGDSSVRRIGSSLGSNGDSHSGKRRFDDSSRNSFFELQVADTTDGEKQPQLIIKGALDRE
QRDSYELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKTVYEADLPENSSPGAPILQ
LKAMDADVGVNGQIEYVFGASTESVRRLLRLDESTGWLSVLHRIDREDVSQLRFTVMARD
RGQPPKTDKAAVVLNIKDENDNEPSIDIRKIGRIYLRDGVANVAEDVVVDTPIALVQVSD
RDQDQNGFVTCTVVGDVPFQLKLTSENDGEMNKKKYFLHTSAPLDYESVQEYTVVIVAVD
SGSPSLSSNNSLLVKVTDTNDNPPIFSKSTVEVSFAENNAPGERVATMKATDADSGKNAE
ISYSLDSSVNGIFSIEADSGDIRVNTILDREQTERYEFKVVAKDKGMPILQGSATVVILV
ADKNDNEPKFMQDVFTFYVKENMQPNSPVGMVTVMDADKGPNAQMSLFIEEEEEIFSIEN
DTGTIFSTVSFDREQKTQYSFRVKAVDGGDPPRSATATVSLLVMDDNDNPPTVLFPLNNT
YTLLPPASTVQTVVRTVVATDTDTGQNADLHFSIIGGNPFKLFDMDRATGVISLVGKLEQ
KHYGLHRLVVLVNDSGQPSQSTTTLVHVFVNESVANSSVVEAQVARSLATPLNADIAGDP
NYDLSKQRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHD
KGKKPKKDKNKKKCKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGS
PDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYST
QTINKYNKQPFRRVTFSVVSQPQDPHHQGSLQSCYDSGLDESETPSSKSSSGPRLGALPL
PEDSYERTTPDGSVDTRPLPDVAMTGKCTRECDEYGHSDACWMPVRTSPERRPKQQVPGS
QQPPKLSTFMTSGGVGGGATGEQAVNPDIPLAVANGDPVAGAHLLGDRNRNLLHKKMSAS
SSSYDAFATASYAAGAPDDPSRPPEDIPMAQTGDYKTTTCGTLTRREVYL
NT seq 3753 nt   +upstreamnt  +downstreamnt
atgaggactactggcgcagtggactatttgtgctacttggtgctcatcctgcagctgctg
agtcagcccgccgccaagaaagtgctccgctaccgcttggcggaggagggtcccgccgat
atccgaataggaaatgtagccgccgacctgggcattggagccggctctggcgaggtaact
ttcaccctggagtcgggctccgaatactttaaaatcgacaacattaccggggaacttagc
acgaacgaccggcggatagaccgagagaagctacaacagtgccagatgatttttgatgag
aacgaatgtttcatagatttcgaagtgtcagttattggaccggcgcaaagctggctagat
ttgtttgaagggaaagtcattattttggacataaacgacaacacgccttcttttccgtct
cccgttctgactctgtctgtggaggagaacagaccgattggcacgctatatcttttgccc
acggcgaccgaccgtgattttggtaggaatggaatagaaagatatgagctcattcaggat
agcggcgactcctccgtgagacggattggctcgagtttagggagcaacggggactctcac
tctggtaagaggcggttcgatgacagctccaggaacagcttctttgagttacaagtcgct
gacactactgacggcgagaagcagccgcagcttatcattaaaggcgcgctggatagagag
cagcgggactcctatgaactgacgctgcgcgtgagagatgggggcgacccgccacgctcc
tcacaggctatcctcagagtgatgattacagacgtcaatgacaacagcccacgctttgag
aaaaccgtatatgaggctgacctaccggaaaacagctcccctggcgcccccatcctccaa
ttaaaagccatggatgctgatgttggtgtgaacgggcaaatcgagtacgtttttggcgcc
tccactgagtctgtgcggaggctcctgagacttgatgagagcactggctggctgagcgtg
ctccacaggattgaccgcgaggacgtaagccagctgcgcttcactgtaatggcacgagac
cgtggacagcctcccaagacagataaggccgctgttgtactaaatatcaaagatgagaat
gataatgagcccagtattgacattcgcaagattggccgcatctacctgcgtgatggggtg
gccaatgtggcagaggatgttgtggtggacacacccattgcactggtacaggtgtcagac
cgtgaccaggaccagaatgggtttgtgacctgcacagtggtgggtgatgtgcccttccag
ctgaagctgacaagcgagaatgatggcgagatgaacaaaaagaagtacttcctacacacg
tcagcaccactggactatgagtctgtgcaggagtacaccgtggtcattgtggcagtggat
tctggaagccccagtctctccagtaacaactccctccttgtcaaagtgaccgacaccaac
gacaacccgcctatcttcagcaagagcacggtggaggtgtcgtttgcggaaaacaatgcc
cctggcgagcgggtggcgaccatgaaggccacagacgctgacagtggcaagaatgcagag
atctcctactcgctcgactcatccgtgaatggcatattctccattgaagcggacagcggg
gacatccgtgtgaacaccatcctggaccgcgagcagacggagcgctacgagtttaaagtg
gtggccaaagacaagggcatgcccattctccagggctcagccactgtggtcatactggtg
gcggacaagaacgataacgagcccaagttcatgcaggatgtgttcacgttctacgtaaaa
gagaacatgcagcccaacagccccgttggcatggtaacagtaatggatgccgacaagggg
cccaacgcccagatgagcctcttcatcgaggaagaggaggagatcttctccatcgagaac
gatacaggcaccatcttctccactgtgtcgttcgaccgcgagcagaagacacagtactcc
ttccgggtcaaggcggtggatggcggcgaccctccgcgctccgccacggctacagtgtca
ctcttagtgatggacgacaatgacaaccctcccactgtgctctttcccctcaacaacacc
tacacgctgctaccgccggccagcaccgtccaaacggtggtacgtaccgtggtcgccaca
gacacagacacaggccaaaacgccgacctgcacttcagcatcatcggcggcaaccccttc
aagctgtttgacatggaccgggccactggggtcatctcgctggtcggcaagctggagcag
aagcactacggccttcaccggctggtggtgctggtgaacgacagtgggcagccctcacag
agcaccaccaccctggtccacgtcttcgtcaacgagagcgtggccaactcctcagtggtg
gaagcgcaggtggccaggagcttggccaccccgctcaacgctgacatcgctggggacccc
aactacgacctgagcaagcaacggctgagcatcgtcatcggcgtggtgtcgggcatcatg
acagtcatcctcatcatcctcgtggtggtgatggcacgctactgccgccccaagaacaag
aacggctacgaggcgggcaagaaagaccacgaggacttcttcacaccgcagcagcacgac
aagggcaagaagcccaagaaagacaagaacaagaagaagtgcaagcagccgctctacagc
agcatagtcacggtggaggcgtccaagcccaacggccaacgctacgacggcgtcaacgag
aagctctcggacagcccaggaatgggacgctaccgctctgtcaacgggggtcccgggagt
cccgacctggcgcggcactacaagtccagctcgcccctgcccaccgtgcagctgcacccc
cagtcgcccacggcggggaaaaaacaccaagccgtgcaggatctgcctcccgccaacacc
tttgtgggaaccggagataacatatccctaggatcggaccactgctccgagtacagcact
caaaccatcaacaaatacaacaaacagccgttccgccgggtgaccttctcggtggtgagc
cagccccaggacccgcaccaccagggatcgctgcagagctgctacgacagcgggctggac
gagtcggagacacccagcagcaagagctcctcgggcccccggctgggcgccttgcccctg
ccagaggacagctatgagaggaccacgccggacgggagtgtcgacactcggcccctgcct
gacgtagccatgaccggcaagtgcacccgcgaatgtgacgagtacggccactccgacgcc
tgctggatgcccgtgcgcacctcgcccgagcgccggcccaaacagcaggtccccggcagc
cagcagccccccaagctctccaccttcatgacctctggcggggtgggcggcggggccacg
ggcgagcaggcggtcaatccggacatcccgctggcggtggccaacggcgacccggtggcg
ggggcgcacctgctcggcgaccgcaaccgcaacctgctccacaaaaagatgtcagcctcg
tcctcgtcctacgacgcctttgccaccgccagctacgccgccggcgcccccgacgacccc
agccgaccccccgaggacatcccgatggcccagacgggcgactacaagaccacgacctgt
ggcaccctcacccgccgcgaggtctacctgtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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