KEGG   Cryptosporidium hominis: Chro.80448
Entry
Chro.80448        CDS       T00210                                 
Name
(RefSeq) helicase
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cho  Cryptosporidium hominis
Pathway
cho03013  Nucleocytoplasmic transport
cho03015  mRNA surveillance pathway
cho03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cho00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    Chro.80448
  09122 Translation
   03013 Nucleocytoplasmic transport
    Chro.80448
   03015 mRNA surveillance pathway
    Chro.80448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cho03019]
    Chro.80448
   03041 Spliceosome [BR:cho03041]
    Chro.80448
Enzymes [BR:cho01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Chro.80448
Messenger RNA biogenesis [BR:cho03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     Chro.80448
Spliceosome [BR:cho03041]
 Complex C
  Other components
   EJC/TREX
    Chro.80448
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    Chro.80448
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 Helicase_C_2 P-loop_SecA
Other DBs
NCBI-GeneID: 3414300
NCBI-ProteinID: XP_668053
Position
8
AA seq 427 aa
MSVQNTEELVDYEEEETTTRIEEESRADEGSKVGRGNYVAIHASGFRDFFLKPELIRAIG
DAGFEHPSEVQHETIPHAITGVDILCQAKSGMGKTAVFVLSILQQLNPDEESKNVECICI
GHTRELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNSTPNILIGTPGRIIAL
IRQKKLVTEGIAHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQVMMFSATMTKEIRDVC
RKFMQNPVEIFVDDETKLTLHGLLQYYVKLGESEKNRKLNDLLDQLEFNQVIIFVKSVSR
AQALHKLLTECSFPSICIHAALSQQERISRYQQFKNFEKRIMVATDLFGRGIDIERVNIV
INYDMPENTDSYLHRVGRAGRFGTKGLAITMVSSQTDSQVLNDVQSRFEVNIAEMPNQID
TSSYINQ
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgtctgttcaaaatactgaggaattagtagactatgaagaggaggagactacaacaaga
attgaggaggagtctagagcggatgagggatctaaggtgggtagaggtaattatgtagct
attcacgcctccggattcagggactttttcttaaagcctgaattaattagagccataggt
gatgcagggtttgagcatccttctgaggtgcagcatgagacaattccccatgctatcaca
ggtgttgacattttatgtcaagctaaatcgggaatgggaaagacagcagtttttgtattg
tcgatcctccagcagttaaatcctgatgaagagagtaagaatgttgaatgcatttgcatt
ggacatactagggagttagctttccaggtgaagaatgagtttgatagattttcaaaatac
ctcaagaatgtgaagcctcaggtagtttatggaggcatccccatacaaaaggatatagat
atgctttcaaactctacaccaaatattttgattggtacgcctggaagaataattgcgtta
atcagacagaagaagttagtgactgagggtattgctcattttgttttggatgaatgcgac
aaatgtctagagtctcttgatatgagaaaagatgtccaagagatcttcatgagtactcca
agaaagaagcaggtaatgatgttcagtgctacaatgacaaaggagattagagatgtatgc
agaaagtttatgcagaatcctgttgagattttcgttgatgacgagacaaaattgacatta
catggtttactacaatactatgtaaagttgggtgaatctgaaaaaaatagaaagcttaat
gatttacttgaccaattagagtttaaccaggtgattatctttgtcaagagtgtttctaga
gcccaagcactccataagcttcttacagaatgtagctttccatcaatttgtattcatgca
gctcttagccagcaggaaagaatttcaagataccaacaattcaaaaactttgagaaaaga
attatggtagcaaccgacttatttggaagaggtattgatattgaaagagtaaatattgta
attaattacgatatgccagagaatacagattcttatcttcatagagtcggaagagccggt
agatttggtacaaaaggtcttgcaattaccatggtctcttctcaaactgactctcaagta
ctcaacgacgtgcagagtagattcgaagtcaacattgctgaaatgccaaatcagattgat
acttcctcatatatcaatcaatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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