KEGG   Chondrocystis sp. NIES-4102: NIES4102_01810
Entry
NIES4102_01810    CDS       T05085                                 
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
chon  Chondrocystis sp. NIES-4102
Pathway
chon03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:chon00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    NIES4102_01810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chon03021]
    NIES4102_01810
   03400 DNA repair and recombination proteins [BR:chon03400]
    NIES4102_01810
Enzymes [BR:chon01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     NIES4102_01810
Transcription machinery [BR:chon03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     NIES4102_01810
DNA repair and recombination proteins [BR:chon03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      NIES4102_01810
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 Cas9-BH DUF2164
Other DBs
NCBI-ProteinID: BAZ43182
UniProt: A0A1Z4RL42
Position
196785..198668
AA seq 627 aa
MRNPIEQRFDYVKIGIASPERIRQWGERTLPNGQLVGEVTKPETINYRTLKPEMDGLFCE
RIFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKG
IPSYLSILLDMPLRDVEQVVYFNAYVVLDPGNAGNLSAKQLLTEDQWIEIEDQLYSEDSE
LIGVEVGIGAEAVQRLLEEVNLEDEAEQLREQINDAKGQKRAKLIKRLRVIDNFVATGSR
PEWMVLNAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVR
NEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRS
VIVVGPKLKIYQCGLPREMAIELFQPFVIHRLINSGMVNNIKAAKKLIQRNDSSVYEVLK
EVIAGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLS
LESQAEARLLMLACHNILSPATGRPIVAPSQDMVLGCYYLTADNPKAVKGKGRRFGNLDD
AIKAYEQGQVDIHAHVWLRYDGEIVTDEPDLEVIESETLADGSKIEYYRQRFVKRSSEGE
QVAQYIDTTIGRIIYNKTVQDALTTTV
NT seq 1884 nt   +upstreamnt  +downstreamnt
atgagaaatccaatagaacaaagatttgattacgtaaaaatcggcattgcctctcctgag
cgaattcgtcaatggggagaaagaactttacctaatggtcagttagtgggagaagttact
aaacctgagaccattaactatcgtacccttaagccagaaatggatgggttattctgtgag
cgcatttttgggcctgctaaagactgggaatgtcattgcggtaaatataagcgagtacgt
catcgtggtatcgtctgtgaacgttgcggagtagaggttacagagtcacgagtacgtcgg
catcgtatgggttacattaaattagctgctcctgtaactcatgtttggtatcttaagggg
attcctagctatttaagcatcttgttagatatgcctttaagagatgtcgagcaagtagtt
tattttaatgcttatgtagttttagatcctggtaatgcaggtaatttgtcagctaaacaa
ctattaactgaagatcagtggatagaaattgaagatcaactctatagtgaagattcagaa
ttgattggagttgaagttggcattggggctgaagcagtacaaaggcttttagaagaggta
aatttagaagacgaagcagagcaactacgggaacaaattaatgatgccaaggggcaaaaa
agagcaaaattaattaaacgtttgcgggtaatagataactttgttgcaacaggttctcga
cctgaatggatggtacttaatgctattcctgtaattccgcccgatttacgcccaatggtg
caactagatggtggtcgttttgctacttctgacttaaacgatctttatcgtcgagtgatt
aatcgtaataatcgtttagccagactgcaagaaattttagccccagaaattatcgtgcgc
aacgagaaacgaatgttacaagaagcagtagatgctttgattgataacggtcgtcggggt
cgaacagtagttggggcaaataatcgccctctcaaatccttgtcggatattattgaagga
aaacaaggacgttttcgtcagaacttattaggaaaacgggttgactactcaggtcgttcg
gtaattgtggttgggccaaaactgaaaatctatcagtgtggtttacctagggaaatggca
attgaattatttcagccgtttgtgatccatcgcttaattaatagcggtatggtcaataat
attaaggcagctaagaaattaattcaacgcaatgattctagtgtgtatgaagttttaaaa
gaggtaattgctggacatcctgtaatgctcaatcgcgcccctactttacaccgtctaggt
attcaagcctttgagcctatcttagtagaaggaagagcaattcaacttcatcctttagtt
tgtcctgcatttaatgctgactttgatggagaccaaatggcggtacacgtacccctttct
ttggaatcacaagcggaagctagattattgatgcttgcttgtcataatattctttctcca
gctacaggaagaccaattgttgcaccttctcaagatatggttttaggttgttattactta
actgctgataaccctaaagcagtcaaaggcaaaggtagacgctttggtaatttagatgat
gcaataaaagcatacgaacaaggtcaggtagatattcatgctcatgtttggctacgttat
gacggtgagatagtcaccgatgaaccagatcttgaggttatcgaatcagaaactttggct
gatggcagcaaaattgaatattatcgtcagcgatttgttaaaaggtcttctgaaggtgag
caagttgcccaatatatagatactactattggtcgcattatatataacaagacagtccaa
gatgctttgacgacaactgtataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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