KEGG   Chondrocystis sp. NIES-4102: NIES4102_32900
Entry
NIES4102_32900    CDS       T05085                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
chon  Chondrocystis sp. NIES-4102
Pathway
chon03410  Base excision repair
chon03430  Mismatch repair
chon03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:chon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    NIES4102_32900
   03430 Mismatch repair
    NIES4102_32900
   03440 Homologous recombination
    NIES4102_32900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chon03400]
    NIES4102_32900
DNA repair and recombination proteins [BR:chon03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     NIES4102_32900
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     NIES4102_32900
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NIES4102_32900
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1 Toprim
Other DBs
NCBI-ProteinID: BAZ46260
UniProt: A0A1Z4RUX9
Position
complement(3726423..3728501)
AA seq 692 aa
MSEQHIHSQSNPSGYRRFPNQRWQIATSEPQTALELSMGTGLLPLVTQVIINRDIMTVDA
AQMYIDPESQQLPSPLSEFSDLAISVELIKEAIASKEQIAICGDYDADGMTSTALLLRTL
KHLGAEVDYAIPSRMKDGYGINKRIVEEFAANGVGLILTVDNGISAYEPIARAVELGLSV
IITDHHDLPEKLPPADAILNPKLLPDSSVYKGLAGVGVAYILAIATAQSLGKLKGLTNPI
LELFTLGTIADLAPLIGVNRRWLKRGLRALPNSQLSGIQALMQVAGVDEAQKQLKPDDIG
FRLGPRINAVGRIGDPQMVIELLTTDEPGLALERAMQCEQINYKRRQLCEQIEKEAIALV
ESTPILWQQERVLVLVAAGWHHGVIGIVASRLVERYGVPVFIGTYEDEDEQSNSNLMIRG
SARSIDEFNVFDALNYCSDLLGKFGGHRAAGGFSLAANNLEQFKQRLSKFAYQCLELEHL
KPLVKIDAQANLEQINLELYKQLESLQPWGIGNNPPVFWTGCVKIIEQKAIGQNRNHLKL
TIQAANSDFQIKAIAWRWGEYFPLPEYLDIAYQLKENNWQGQTNIELELVGVRLPQVVPN
TSMATLNPAISSQNIQKVVFTHSGRIYVCSKSRQELRIRNDRGDVLAIKQGERYGLIGKT
RSQAKSVNVTQPPYFQLIKTALQAIDQRDIDV
NT seq 2079 nt   +upstreamnt  +downstreamnt
atgagcgagcagcatatacactcgcagagtaatccctctggttatcgacgttttcccaac
caaagatggcaaattgctacatctgagccacaaacagctttagagttgagtatggggaca
gggttattacctttggttacacaagtaatcatcaatcgagatatcatgactgttgatgca
gcccaaatgtatatcgatcctgaatcgcaacagttaccctcacctctatctgagtttagc
gatttagcaattagcgtagaattaatcaaggaagcgatcgcgtcaaaggaacaaattgcc
atctgtggggattacgatgctgatggcatgaccagtaccgccttattattaagaacctta
aaacatttaggcgcagaagtagattatgccattcctagtcgcatgaaggatggttatggt
atcaataaacggatagtagaagaatttgcagctaatggagtgggtttaattctcacggta
gataatggcatttctgcctatgaaccgatcgctcgagcagtagaattgggtttgagtgtg
attattaccgatcatcatgatttgccagagaaattaccgcctgccgacgcaattttaaat
cctaaattattaccagatagctctgtatataaaggtttagcaggggttggagtagcttat
attttggcgatcgccaccgctcaaagtttagggaagctcaaaggtttaactaatccaatt
ttagaattatttactttaggtacaatagcggatttagctcctttaattggggttaatcgt
cgttggctgaagcgagggttaagagctttacctaattcccaattgtcgggtattcaagcc
ttaatgcaagttgcaggagttgatgaggcacaaaagcaattaaaacccgatgatattggt
tttcgcttagggcctagaattaacgccgtaggacgtattggcgacccgcagatggtaatt
gagctattaactactgatgaacctggattagctcttgagcgggcaatgcaatgtgaacaa
ataaattataaacgtcgtcagctatgtgagcagatagaaaaagaagcgatcgccctggtg
gaatctacaccaattctttggcaacaagaacgagttttggtattagttgcagcaggctgg
catcatggggtaattgggattgtagcatctcgtttagtagaacgttatggagtccctgtg
tttattggtacttatgaagatgaagatgagcaatctaacagcaatttaatgattcgagga
tcagcaagaagtattgatgaatttaatgtttttgatgctctcaattattgcagtgattta
ttaggaaaatttgggggacatcgggcagcagggggttttagtttagctgctaataattta
gaacagtttaaacaaagattgagtaagtttgcttatcagtgcctagagttagaacatctc
aagcctttagttaaaatagacgctcaagcaaatttagaacaaatcaatttagaactttat
aaacagttagaaagcctacaaccgtggggtattggtaataatcctcccgtattttggact
ggatgcgtcaaaataatcgagcaaaaagcgatcggtcaaaatcgtaaccatttaaagtta
actatacaagcagctaattctgactttcaaatcaaagctattgcttggcgttggggtgaa
tattttcctctgccagaatatcttgatattgcttatcaactaaaagaaaataattggcaa
ggacagacaaatattgaattagaattggtgggagttagattgcctcaagttgtgccaaat
acttctatggctaccctcaaccctgccattagttcccaaaacatccaaaaagtagtcttt
acccatagtggtagaatttatgtatgcagcaaatctcgccaagaactaagaattagaaac
gatcgcggtgatgttttagccattaaacaaggtgagcgttatggtttaattggtaaaact
cgtagtcaggctaaatcagtaaatgtgactcaaccaccctattttcaattgattaaaact
gctcttcaagccattgatcaacgggatatagatgtttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (21)   

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