KEGG   Caulobacter henricii: AQ619_11215
Entry
AQ619_11215       CDS       T04110                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
chq  Caulobacter henricii
Pathway
chq03030  DNA replication
chq03410  Base excision repair
chq03420  Nucleotide excision repair
chq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:chq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AQ619_11215
   03410 Base excision repair
    AQ619_11215
   03420 Nucleotide excision repair
    AQ619_11215
   03430 Mismatch repair
    AQ619_11215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:chq03032]
    AQ619_11215
   03400 DNA repair and recombination proteins [BR:chq03400]
    AQ619_11215
Enzymes [BR:chq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AQ619_11215
DNA replication proteins [BR:chq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AQ619_11215
DNA repair and recombination proteins [BR:chq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AQ619_11215
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AQ619_11215
   MMR (mismatch excision repair)
    DNA ligase
     AQ619_11215
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AQ619_11215
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 PTCB-BRCT HHH Bep_C_terminal
Other DBs
NCBI-ProteinID: ALL13857
UniProt: A0A0P0P0B3
Position
complement(2388892..2391243)
AA seq 783 aa
MTLIPVADLSETEAASELARLADDLAEHDLRYHQQDAPTISDAEYDALKRRNLDIETRFP
HLIRENSPSMTVGAARADQFSPVEHGVPMLSLDNAFSNDEATEFDARIRRFLKLSADETV
AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPEVI
EVRGEVYVELAAFAAFNAAAEAAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG
LVSDSFAGSQWEALAQLEAWGFVTTAPPAKRVENAQGLLDIYAAFETLRPTLDFDIDGVV
YKVDDLDRQKRLGFVSRSPRWAIARKFPAQKARTILEAIDLQVGRTGAITPVARLKPVTV
GGVSVTNATLHNGDEIARLDVRVGDTVVIQRAGDVIPQIVEVALEARPDPAPPAYEFPHA
CPCPLKTPLARETNASGTESVVRRCTGEFACPFQRVEHLRHFVSRRAFDIEGLGEKQLQA
FFDEGWIKEPADIFRLARDAEKLDALRTRDGYGETSVANLVKGIEARRTIGLDRVIYGLG
MRDIGETTSTVLARHFDTFADLQAAAEAASKGLPTATYLELSTAPGVGPKALDLLVEVGK
GGLKADPWPQAESVELKIGHAVPKLTKPARAALTERYATWHAFAQALAEAANGAPGEDYL
HLAAVDGVGPVAAQSLARFFSEDHNRQKVAALVEQLDIQALAKPKTDTAVAGKTVVFTGA
LEKMTRDEAKAQAEALGAKVASSVSKKTDLVVAGPGAGSKLKTATELGIQVMTEDDWLAM
VAG
NT seq 2352 nt   +upstreamnt  +downstreamnt
gtgaccctgatccccgtcgccgatctgtccgagaccgaggctgccagcgaactggcccga
ctggccgatgatctggccgagcacgacctgcgctatcaccagcaggacgcgcccacgatc
agcgacgccgagtatgacgcgctcaagcgtcgcaacctcgatatcgagacccgctttccg
catctgatccgggagaactcgccgtcgatgacggtcggagcggcacgggccgatcagttc
tcgccggttgagcacggtgtaccgatgctgagcctcgacaacgccttctccaatgacgag
gcgaccgagttcgatgcgcggatccggcggttcctgaagctgtcggcggacgagaccgtc
gcctatacggccgaacccaagatcgatggcctgtcggcctctctccggtacgagaagggg
gtgctggtccagggcgcaacccggggcgatggccgcgtgggcgaggacgtcaccgccaat
ctgcgcaccattgccgacattccccatcgcctgaagggctcgggctggcccgaggtgatc
gaggtgcgcggcgaggtctatgtcgaactggccgctttcgccgccttcaatgccgctgcc
gaggctgcgggccagcgcacctatgccaatccccgcaacttcgccgccggctccctacgc
cagatcgatccgaagatcagcgcccagcgcccgctgcggttcttcggctatgcctggggt
ctggtcagcgacagcttcgccggcagccagtgggaggccctggcccagctcgaagcgtgg
ggtttcgtgaccacggccccgccggccaaacgggtggagaatgcccagggcctgctcgac
atctatgccgccttcgagaccctgcggcccaccctggatttcgacatcgacggcgtcgtc
tacaaggtcgacgacctggaccggcaaaagcgcctgggttttgtctcgcgctcgccccgc
tgggccatcgctcgcaagttcccggcccagaaggcccgcacgatcctcgaggccatcgac
ctgcaggtgggccggaccggggcgatcacgccggtcgcccggctgaagccggtgaccgtc
ggcggcgtctcggtgaccaacgccaccctgcacaatggcgacgagatcgcccgactggac
gtgcgggtgggcgacaccgtggtgatccagcgggccggcgacgtgatcccgcagatcgtc
gaggtggcgctggaggcgcgaccggatcccgcgccgccggcctatgaattcccccacgcc
tgcccgtgtccgctcaagacgcctctggcccgcgagaccaatgcctcggggaccgagtcc
gtcgtgcgccgctgcacgggtgagtttgcctgtccgttccagcgggtggagcacctgcgc
cacttcgtgtcgcgccgggccttcgacatcgagggtctgggcgagaagcaactgcaggcc
ttctttgacgagggctggatcaaggaaccggccgacatcttccgcctggcccgcgatgcg
gaaaagctggacgccctgcgcacccgcgacggctatggcgagacctcggtggccaatctg
gtcaagggcatcgaggcccgccgcaccatcggcctggaccgggtgatctatggtctgggc
atgcgggacatcggcgagaccacctcgaccgttctggctcgccacttcgacaccttcgct
gacctgcaggccgccgccgaggccgcctccaaggggctaccgaccgcgacctatctcgaa
ctctcgaccgcgcccggtgtcgggcccaaggcgctggacctgctggtcgaggtcggcaag
ggcgggctgaaggccgatccgtggccgcaggccgagagcgtggagctcaagatcggtcac
gccgtgcccaagctgaccaaaccggcccgagcggccctgaccgagcgctatgcaacctgg
cacgcctttgcccaagccctggcggaagcagccaatggcgcgccgggtgaggattacctg
cacctggccgccgtcgatggcgtcgggcccgtggcggcccagtccctggcccggttcttc
agcgaggaccacaatcgccagaaggtcgctgccctggtcgaacagctcgacatccaggcc
ttggccaagcccaagaccgacactgccgtagccggcaagaccgtggtcttcaccggcgct
ctggagaagatgacccgcgacgaggccaaggcccaggccgaggccctgggggccaaggtc
gcctcctcggtgtcgaaaaagactgatctggtggtggccgggccgggggcgggttccaag
ctcaagacggctaccgaactcggcattcaggtgatgaccgaggatgactggctagccatg
gtggccggttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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