KEGG   Chromobacterium sp. ATCC 53434: CXB49_16425
Entry
CXB49_16425       CDS       T05234                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
chro  Chromobacterium sp. ATCC 53434
Pathway
chro03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:chro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CXB49_16425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chro03400]
    CXB49_16425
Enzymes [BR:chro01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CXB49_16425
DNA repair and recombination proteins [BR:chro03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CXB49_16425
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter MFD_D3 CarD_TRCF_RID Helicase_C ResIII UB2H ERCC3_RAD25_C Glyco_tran_WecG DUF4217
Other DBs
NCBI-ProteinID: AUH52284
UniProt: A0A2H5DZ22
Position
3734251..3737643
AA seq 1130 aa
MDTLPPLPPAGQKTRCDRLPDGLDSHAIAALAKQRRPLLILTADAQAAQRLKAELPFFAP
DLSIALFPDWETLPYDHFSPHGDLVSERLATLWQIRQRECQVVIAPVATALSRLAPVGYL
LGRTFFLKAGQQLDVEKLRGDMVTAGYQHVTQVMAPGEFSVRGSLIDLFPMGSPLPYRID
LFDAEIDSLKTFDPDTQRTLYPVPEVRLLPAREYPADESGVTAFRQHYREKIEGDPSRSR
VYKDVSQGLWPAGIEYYLPLFFDETATLFDYVGDDALLVQHHDVQAAAETFWRDAQSRYD
MARGDTERPVLPPADIFLRPDELMARLKPYARIEFSGDGDAGAALPELAVDRRADAPLHK
LQGFIASGGKRVLLAAESLGRRETMLAFLAENGIKPTPVDSWADFSDGKIALALTVAPLY
SGFALAEAAIAVVTESELYQHVARSHTRRKASRAGSDAMLRDLAEVKAGDPVVHEAHGIG
RYVGLVTMDLGEGQTELMQLEYADGATLYVPVSQLQLISRYAGGATDDIQLHKLGNPAWE
KAKKRAAEKARDTAAELLNLYAQRAAREGHSFQLSHADYSAFAAGFGFEETPDQATAIEA
VIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSD
RLADWPVRIAELSRFRSGKETKQALAGLADGGVDIVIGTHKLVQPDIEFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVS
PLSNGVIREAVLRELKRGGQVFFLHNEVDTIENMREKLTELIPEARIGVAHGQLRERELE
QVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVGFS
LFTEMLKQAVRDLKKGRAPDLDAPLGVTTEINLHSPALLPDGYCPDVHERLLIYKRLASC
ETEAEIDAIHEELIDRFGLPPQSVKTLIESHRLRLVAKELGVQKLDASEVAVQITFIKNP
PIDPVKIIMLIQSKKHYRLAGQDKLRVEQALPEVAQRIVKVKEVLKELSA
NT seq 3393 nt   +upstreamnt  +downstreamnt
ttggatacgctcccgcccctgccgcccgccggccagaaaacccgctgcgaccgcctgcca
gatggcctggacagccacgccatcgccgcgctggccaagcagcgccgtccgctgctcatc
ctcaccgccgacgcccaggccgcccagcggctgaaggccgaattgccgttcttcgcgccc
gacttgtcgatcgcgctgtttcccgactgggaaacgctgccgtacgaccacttttcgccg
cacggcgacctggtcagcgaacggctggccaccttgtggcagatccgccagcgcgagtgc
caggtggtgatcgccccggtggccaccgcgctgagcagactggcgccggtgggctacctg
ctgggccgcaccttcttcctgaaggccggccagcagctggatgtcgagaagctgcgcggc
gacatggtcaccgccggctatcagcacgtcacccaggtgatggcgccgggcgagttctcg
gtgcgcggcagcctgatcgacctcttcccgatgggctcgccgctgccgtaccggatcgac
ctgttcgacgccgaaatcgacagcctgaagaccttcgacccagacactcagcgcacgctg
tacccggtgccggaagtgcggctgctgccggcgcgcgagtatccggccgacgagagcggc
gtcaccgccttccgccagcattaccgggaaaagatcgaaggcgacccgagcaggagccgc
gtctacaaggacgtgtcgcaaggcctgtggccggccggcatcgagtactacctgccgctg
ttcttcgacgagacggcgacgctgttcgactatgtcggcgacgacgcgctgctggtgcag
caccacgacgtgcaggcggcggcggaaaccttctggcgcgacgcgcaaagccgctacgac
atggcgcgcggcgacaccgagcgcccggtgctgccgccggccgacatcttcctgcgcccc
gacgaattgatggccaggctcaagccttacgcccgcatcgaattctccggcgacggcgac
gccggcgccgcgctgccggaactggcggtggaccgccgcgccgacgcgccgctgcacaag
ctgcaaggcttcatcgcctccggcggcaaacgcgtgctgctggccgcggaaagcctgggc
cggcgcgaaaccatgctggccttcctggccgagaacggcatcaagccgacgccggtggac
agctgggccgatttctccgacggcaagatcgcgctggcgctgaccgtcgccccgctctac
tccggtttcgcgctggccgaagcggccatcgccgtggtgaccgagagcgagctgtaccag
cacgtcgcccgcagccacacccgccgcaaggccagccgcgccggctccgacgcgatgctg
cgcgacctggccgaggtcaaggccggcgatccggtggtgcacgaggcgcacggcataggc
cgctacgtcggcctggtgacgatggacctcggcgagggccaaaccgagctgatgcagctg
gagtacgccgacggcgcgacgctgtacgtgccggtgtcgcagctgcagctgatctcgcgc
tacgccggcggcgccaccgacgatatccagctgcacaagctgggcaaccctgcctgggaa
aaagccaagaagcgggccgccgaaaaggcgcgcgacaccgcggccgagctgctgaacctg
tacgcgcagcgcgccgcgcgcgagggccacagcttccagctgtcccatgccgactacagc
gccttcgccgccggcttcggcttcgaggagacgccggatcaggccaccgccatcgaggcg
gtgatccaggacatgtgctccggcaagcctatggaccggctggtctgcggcgacgtcggc
ttcggcaagaccgaggtcgcgctcagggccgccttcgtcgcggtgatgggcggcaagcaa
gtggcggtgctggtgccgacgacgctgctggccgagcagcatttccagaacttctccgac
cgcctcgccgactggccggtgcgcatcgccgaactgtcccgtttcaggagcggcaaggaa
accaagcaggcgctcgccggcctcgccgacggcggcgtcgacatcgtcatcggcacccac
aagctggtgcagccggacatcgaattcaagaacctcggcctggtcatcatcgacgaggaa
caccgcttcggcgtgcggcagaaggagcagctgaaacggctgcgcgccaatgtcgacgtg
ctgacgctgaccgcgacgccgattccgcgcacgctgtcgatggcgctggaaggcctgcgc
gacttctccgccatcgccaccgcccccagccgccggctggcggtcaagaccttcgtcagc
ccgctgtccaacggcgtgatccgcgaggcggtgctgcgcgagctgaagcgcggcggccag
gtcttcttcctgcacaacgaggtcgacacgatagaaaacatgcgggaaaagctgaccgag
ctgatcccggaggcgcgcataggcgtcgcccacggccagctgcgcgagcgcgagctggag
caggtgatgcgcgacttcctgcagcagcgcttcaatctgctgttgtgctccaccatcatc
gaaaccggcatcgacatccccaacgccaacacgatactgatcaaccgcgccgacaagttc
ggcctggcccaactgcaccagttgcgcggccgcgtcggccgctcgcaccaccaggcctac
gcctatctgctgacgccggacggcatgacccgcgacgcgcagaagcggctggaagcgata
cagctgtccggcgaactgggcgccggcttctacctggcgatgcacgacctggaaatccgc
ggcgccggcgaagtgctcggcgaaggccagtccggcgaaatgcaggaagtgggcttttcc
ctgttcaccgagatgctgaagcaggcggtgcgcgacctcaaaaaaggccgcgcgccggat
ctggacgcgcccctgggcgtcaccaccgagatcaatctgcacagtccggcgctgctgccg
gacggctactgcccggatgtgcacgagcggctgctgatttacaagcggctggccagctgc
gagaccgaggccgagatcgacgccatacacgaagagctgatcgaccgcttcggcctgccg
ccgcaaagcgtgaagacgctgatcgaaagccaccgcctgcgcctggtcgccaaggagctg
ggcgtgcagaagctggacgccagcgaggtggcggtgcagatcaccttcatcaagaatccg
ccgatagacccggtgaagatcatcatgctgatccagagcaagaagcattaccggctggcc
gggcaggacaagctgcgcgtcgagcaagcgctgccggaggtggcgcagcgcatcgtcaag
gtgaaggaggtgttgaaggagttgagcgcctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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