KEGG   Citrus x clementina (clementine): CICLE_v10017231mg
Entry
CICLE_v10017231mg CDS       T02982                                 
Name
(RefSeq) hypothetical protein
  KO
K15171  transcription elongation factor SPT4
Organism
cic  Citrus x clementina (clementine)
Pathway
cic03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:cic00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    CICLE_v10017231mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cic03021]
    CICLE_v10017231mg
   03019 Messenger RNA biogenesis [BR:cic03019]
    CICLE_v10017231mg
Transcription machinery [BR:cic03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     CICLE_v10017231mg
  RNA polymerase I system
     CICLE_v10017231mg
Messenger RNA biogenesis [BR:cic03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     CICLE_v10017231mg
SSDB
Motif
Pfam: Spt4
Other DBs
NCBI-GeneID: 18050675
NCBI-ProteinID: XP_006448501
UniProt: V4U747
Position
Unknown
AA seq 115 aa
MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN
GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR
NT seq 348 nt   +upstreamnt  +downstreamnt
atgggaagcgcaccggcacaaattccaacaagcttcgggcatgagctgagagcttgcctc
cgttgtcggcttgtcaaaacctatgatcagtttagagaatcgggatgcgagaactgtccc
ttcttcaagatggatgaagaccacgagcgtgttgttgattgtactacccctaattttaat
ggcattatatcagtcatggatccaactagaagctgggctgctcgctggttgcgaattgga
agatttgtccctggttgttatactcttgctgtctcagaagccctacctgaggacttgcag
aacttatgcgaagacgagcgcgtgcaatatgtgccgccaaaacgttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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