KEGG T04193: ATE47

Chryseobacterium sp. IHB B 17019: ATE47_09765

Entry

ATE47_09765       CDS       T04193

Name

(GenBank) ATP-dependent DNA ligase

K01971

bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]

Organism

cih Chryseobacterium sp. IHB B 17019

Pathway

cih03450

Non-homologous end-joining

Brite

KEGG Orthology (KO) [BR:cih00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ATE47_09765
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cih03400]
    ATE47_09765
Enzymes [BR:cih01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ATE47_09765
DNA repair and recombination proteins [BR:cih03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ATE47_09765

SSDB

Motif

Pfam:

LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase DNA_ligase_OB_2 RPA_C DNA_ligase_C

Other DBs

NCBI-ProteinID:

ALR32551

Position

complement(2112424..2114472)

AA seq 682 aa
MAHDKTSQNEISSLLKKAKKAAWPADISPMLATLVDEPFSDPDWVYEVKWDGYRTIAYID
NGKVDLRSRNNKIFTDKYYSITEIFKNWNIKAVIDGEITVINKNGVSDFASLQNWRSETD
GELIFYAFDLLWYDGKDLTQLPLLERHAILNHIFSQNNDDRIRISTIFNTDGIEFFEAAQ
KLGLEGIMAKKANGTYDIGARSKDWLKIKTDKRQEVVIGGFTNNEGSSKIFSSLLLGVYQ
GKEFHYVGKVGTGFSSKKQKEMMEEFKPLITKKNPFNTEPDINKPSRFRPNPPKATATWL
KPELVCEVSYAEITDDGVFRHPSFKGMRSDKKAKEVHLEVEKNTENIIADTGNTQSEEKK
DHIVKASENKSVKTLLNPTEKTQVKKVKGHELKFTNLDKIFWPDEKLRKRDLINYYFQVA
PYILPYLKDRPQSMNRFPNGINGKSFYFKDVTGKAPDWVKTFLYHSETDDRDRHYLVGDD
EATLLYMANLGCIEMNPWSSTIQKPDHPSFCIIDLDPDKNSFDQVIEAAQVTKQILDDLG
IPSYCKTSGSTGLHIYIPLGNKYTYEQSKEFARVIVTLVHNELSEFTSIERAIKDRKGKM
YLDFLQNRPHATIAAAYSVRPKPGATVSMPLHWDEVKKGLKMSDFTILNAVERLESEGDI
FQPVLGKGIDLVNVIKKFSEGF

NT seq 2049 nt +upstreamnt +downstreamnt
gtggctcatgacaaaacatcgcaaaacgagatcagctcacttttaaaaaaagcgaaaaag
gcagcctggccggcagatatctccccaatgctggcaactcttgtggacgagccgttcagt
gatccggattgggtttatgaagtaaaatgggatggttacagaaccatcgcatatattgat
aacggtaaggtagacctgagatcgcggaacaataaaatattcacagacaaatactattca
ataacagaaattttcaaaaactggaatataaaagcggttattgacggggaaattacagtc
atcaataaaaacggtgtttccgattttgcaagccttcaaaactggcggagcgaaacagac
ggagagctgatattttacgcattcgacctgctttggtacgatggtaaagaccttacacag
ttgccgctattggaaagacatgccatccttaatcatattttcagccagaataatgatgac
agaatcagaatcagcacgatatttaataccgatggaatagagttttttgaagccgctcaa
aagctggggctggaaggtattatggcaaagaaagccaatggtacgtatgatattggcgct
cggtccaaagactggcttaaaattaaaactgataaaagacaggaagttgtaatcggtggt
ttcacgaataatgaaggctcttcaaaaattttcagttctttgctgttaggagtgtatcag
gggaaagaatttcattacgtaggaaaagtggggacaggtttttcctcaaaaaaacaaaaa
gaaatgatggaagaatttaagcctttgattacgaaaaaaaatccttttaatacagaaccg
gacattaataaaccttcccgcttccgccccaatcctccgaaagctacggcaacctggctc
aaaccagagcttgtatgtgaagtaagctatgccgagatcactgacgacggagtttttcgt
catccttcatttaaaggaatgagatctgataaaaaagccaaagaagtacatctggaagta
gaaaaaaatacggaaaacatcattgcagataccggaaatactcaatctgaagaaaaaaaa
gaccatattgtaaaagcttcagaaaataaaagtgtaaaaactttgcttaatccaactgaa
aaaacacaggtaaaaaaagtaaaaggccacgagctgaagttcaccaatctcgataaaatt
ttctggccggatgagaaattaaggaaaagagatctcatcaattattattttcaggttgca
ccttatattcttccataccttaaagaccgtccgcaaagcatgaaccgtttcccaaatggg
atcaacgggaaaagcttttattttaaagatgtcacaggcaaagccccggattgggtgaaa
acctttttataccacagtgaaactgatgaccgcgaccgtcattacctcgtgggagacgat
gaagcgaccttgttatatatggctaatcttggatgtatcgagatgaatccatggagtagt
accatacaaaagccggatcatccttcattctgtatcatcgaccttgatccggataagaat
tcttttgatcaggttatagaagcggcgcaggtcaccaaacagattttggatgatttggga
attccttcttattgtaaaaccagcggctcgaccgggctgcatatctatattccgttggga
aataaatatacttatgagcagtccaaagagtttgcccgggtgattgtaaccttggttcac
aatgagttatcagaatttacaagtatcgaacgtgccatcaaagaccgaaaaggtaaaatg
tatcttgattttttacaaaacaggccccacgcgacaattgctgcagcgtattctgtacgt
ccaaagcccggcgcgacagtctctatgccgctgcattgggatgaggtaaagaaaggtttg
aagatgagcgatttcacgattttaaatgctgttgaacgtttggaaagcgaaggtgatatt
tttcaaccagttttaggaaaaggaattgatcttgtcaatgttattaaaaaattttctgaa
ggattttaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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