KEGG   Ciona intestinalis (yellow sea squirt): 100175086
Entry
100175086         CDS       T01056                                 
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC2
  KO
K03021  DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    100175086
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cin03021]
    100175086
Enzymes [BR:cin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     100175086
Transcription machinery [BR:cin03021]
 Eukaryotic type
  RNA polymerase III system
   RNA polymerase III
    Core subunits
     100175086
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 100175086
NCBI-ProteinID: XP_009861326
Ensembl: ENSCING00000018498
Position
Unknown
AA seq 1131 aa
MTQIKTEPKEEPTENDLNKPVSTIEDKWLLLPEFLKVKGLVKQHIDSFNYFVNVDIKNIV
KANKRVLSDADPNWYLEYLDIHVGVPDVEESFNVTRAVTPHECRLRDMTYSASITVDIEY
TRGQQRIIRKALPIGRMPIMLRSSNCVLTGKNGVELAKMNECPYDPGGYFVCKGVEKVIL
IQEQMSKNRMIVERDRKGFCSCSVHSSTHEKKTRVNVLQKKGHFYLQQNALNEDMPICVI
FKAMGVESEQSIMQLIGTEENVMSMFSPSLEDCHKLEVFTQLQASKYISGKIRRQRPVWG
AARQSKTDETRDWLNTTLLAHIPVTDWNYHAKAVYLALMIRRIILTQLGYLEVDDRDYYG
NKRMELAGGLISLLFEDLFKRFNSELKKIADLTIPKPRAAQFDVVRHMRQDLITTSLVIA
ISSGNWIVKRFKMERKGVTQVLTRLSYISALGMMTRIASQFEKTRKVSGPRSLQPSQWGM
LCPSDTPEGEACGLVKNLALMTHITVDVEEEPTARLLFNLGVEDVYMLSGEEIHSQLSYI
VFLNGLVLGVVRDPVHLVTTLRLMRRHGYLNDFISVSTNRAHRTVYVSSDGGRLCRPYII
VSKGKPLVTSHHIEELKRGLRSFEDFLRSGLVEYLDVSEENDCFVALDESYITHKSTHLE
IEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQQQRIDTLMYLLVYPQAP
LVKSRTIELINFEKLPAGQNAIIAVMSYSGYDIEDALVLNRASVDRGYGRCLVYRNQKCI
LKRYANQTFDKVMGPALNAETREPIWRHQGLDADGIIMPGVKVESKQVLVNKACPLQTNV
VTKDQAPSYQETPISYRGPVGSTIEKVMVSSNNEESSLIKILLRQTRRPELGDKFSSRHG
QKGVTGLIVQQADMPFNQDGICPDVIMNPHGYPSRMTVGKLMELLGSKAGAIGGKFHYGT
AFGGDKVEDLSQVLTDNGYNYVGKDCLTSGITGESFEAYIYQGPVYYQKLKHMVLDKMHA
RARGPRAVLTRQPTEGRSHDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFEVDVCGK
CGLLGYDGWCQFCKSSKNVATLKIPYACKLLFQELTSMNIIPRLKLKPYNE
NT seq 3396 nt   +upstreamnt  +downstreamnt
atgacgcaaattaagaccgagccaaaagaagaaccaacagaaaatgacctgaataaacca
gtttccactattgaggacaaatggctattgttacctgagttcttaaaagtaaaaggtctg
gtgaaacaacacattgattctttcaactactttgtgaatgttgatataaagaatattgtc
aaagcaaacaagagagttttaagcgatgcagaccccaactggtatttggagtatttggac
atccatgttggtgttcctgacgtcgaagaaagtttcaacgtaacgagagcagtcacacca
cacgaatgtagactacgtgacatgacatattcagcttctataactgttgatatagaatat
acaagaggacaacaaaggataatcaggaaagcattaccaatcggaagaatgccaatcatg
ttacgtagttcgaattgtgttctcactggtaaaaacggggttgagttggcgaagatgaac
gaatgtccttatgacccaggaggttactttgtatgcaaaggtgttgaaaaggtgatcctc
atccaagaacagatgtccaaaaaccgaatgatcgttgaaagagatcgaaaaggtttttgt
tcatgttcagtgcacagttcaacgcacgagaagaaaacaagagtgaatgttttgcagaaa
aaaggacatttttatctccagcagaatgcattgaatgaagatatgccaatttgtgtgatt
tttaaagcgatgggagtagaaagcgagcaatcaataatgcagctgattggaacggaagaa
aatgtgatgtctatgttttccccgtcactggaagattgccataaacttgaggtattcacg
caactgcaagcctcaaaatacatcagcggaaaaatacgacgccagcgtccggtgtgggga
gctgcacgacagtcgaaaacagacgagactcgagattggttaaacactaccctacttgca
catatacctgttacagattggaactaccatgctaaggcagtatacctcgctcttatgata
cgtcgtataattctcactcaacttggttatttagaagtggatgaccgcgattattatggg
aataaaagaatggaattagctggtgggcttatttctcttctatttgaggaccttttcaaa
cgttttaactctgagctaaagaaaatcgctgacttgacaattccaaagccacgtgccgca
cagtttgacgtggtacggcacatgcgtcaggatttgattacgacttctctcgtcattgcc
atttcatcaggcaactggatagtgaaacgatttaaaatggaaagaaaaggggtgacccag
gtcttgaccaggctatcctatatatcagctctcggaatgatgacgaggattgcttctcag
ttcgaaaaaacccgcaaagttagcgggccgagatcgctacagccatcacagtggggaatg
ctctgcccgtcagatacaccggaaggagaagcttgcggcctggtaaagaaccttgctttg
atgacgcacatcactgtagatgtggaggaagaacctaccgctcgtttactgttcaatctt
ggagtagaagatgtatatatgctgtcaggagaagaaatccactcccaactctcgtacatc
gtatttctaaacggactagtactcggtgtcgttcgagaccctgttcatctagttaccacg
ttgcgtctcatgcgcagacacggatatctaaatgactttatatcagtatcgacgaatcgg
gcgcatagaacggtttatgtttcttctgatggtgggaggctctgcagaccttacatcata
gtttcgaagggaaaaccccttgtgacatcacaccacatcgaagaactaaaacgtggtctt
cgttcttttgaggattttttacgatctggattagtggaatacttggatgtcagcgaagaa
aatgattgtttcgtcgcgctagatgaaagctacataacgcacaagtccacacatcttgag
atagaacctttcaccttacttggtgtatgtgcgggtttaataccttatccgcatcataac
caatcacctagaaatacttatcagtgtgctatgggaaaacaagcaatgggaacaattgga
tataaccagcaacagagaattgatacgctgatgtacttgcttgtttatcctcaggcgcca
ttagtaaaatcgcgcacaatagagctgatcaactttgaaaagctaccggctggacaaaac
gcaataattgcagtcatgagttacagcgggtatgatattgaagacgctttggttcttaat
agagcttcagtggacagagggtatgggcgatgccttgtatatcggaaccagaaatgcatt
ttgaaaagatatgcaaaccagacctttgataaagtaatgggacctgctttgaacgcggaa
accagggaaccaatatggaggcaccaaggcttagatgcagatgggataattatgcctggg
gtaaaagttgaaagtaaacaggttctcgtcaacaaagcttgtcctttacaaacaaacgtg
gttacaaaggaccaagcaccctcttaccaagagactcctatatcttatagagggcctgtt
ggttctactattgaaaaggttatggtgtcgtcaaacaacgaggagtcatctctcataaag
atcttattacgacaaacgcgaagacctgaactgggagacaagtttagcagtaggcatggg
caaaaaggagtgacagggcttatagtccaacaagctgacatgccatttaaccaagacggg
atatgtccggatgtcataatgaacccgcatggttatccatcaagaatgactgtggggaaa
cttatggagttacttggtagcaaagcaggtgcaatcgggggtaaatttcactacggaaca
gcttttggtggagacaaagttgaagatttatctcaagtgttgaccgacaatggatataat
tacgttggaaaagactgtttaacatctggaataaccggggaatcatttgaggcttatatt
taccaaggcccagtgtactaccagaaactgaagcatatggttctggataaaatgcacgca
agagccaggggcccacgcgctgttctgaccaggcaaccaacggagggtcggtcacacgat
ggcgggcttcgtttgggtgaaatggaacgagattgtttgattgggtacggagcgagtatg
ttgttgttggaacgtctcatgatttcaagtgatcagttcgaggttgacgtttgtggaaaa
tgtggattacttggctacgacggctggtgtcagttttgcaaatcctcaaaaaatgtcgct
actctaaaaattccatatgcttgcaagttactattccaagaactgacatctatgaatatt
attccaagactaaagctgaagccgtataatgagtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (67)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (7)   
   Pfam (7)   
All databases (91)   

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