KEGG   Ciona intestinalis (yellow sea squirt): 100179190
Entry
100179190         CDS       T01056                                 
Name
(RefSeq) DNA polymerase subunit gamma-1-like
  KO
K02332  DNA polymerase gamma 1 [EC:2.7.7.7]
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    100179190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cin03032]
    100179190
   03029 Mitochondrial biogenesis [BR:cin03029]
    100179190
Enzymes [BR:cin01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     100179190
DNA replication proteins [BR:cin03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase gamma complex (mitochondrial)
    100179190
Mitochondrial biogenesis [BR:cin03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial DNA replication factors
   Mitochondrial DNA polymerase
    100179190
SSDB
Motif
Pfam: DNApol_Exo DNA_pol_A MRVI1
Other DBs
NCBI-GeneID: 100179190
NCBI-ProteinID: XP_002125927
Ensembl: ENSCING00000001343
Position
12:4333517..4337275
AA seq 1122 aa
MISKYKTLWNLRPYNRSIWKNNSMLKYRNISSSEAKVKKDTTSRYNKFGIQMLPEKLHKQ
IFKETRIKDENPKQIQQSIEHLDKFGLWGKEQESLPDYDVTLPKLYGNNVNEHFENVASE
QSRPYREALNKLVKNELPNMPGLDDWVDQPGWTRYTYFNGKLMTEPVEYPAGDAVVFDCE
VLVSASEAPIMAVAASTDAWFSWSSSCLKQEDPRMEANLESMIPIESAVHVKENCTECKL
VIGHNVGYDRARIQEQYYSQLTNVRFLDTMSMHIGVSGFNFQQRVLSQATRSEVGENFVS
GSSAFDNDWVSMGTTNALKEVHKFYCGKTLDKELRDVFVTGNIKDVRENFQELMWYCAKD
VQATYNVLAKLTPLFFDRFPHPVTFAGMLEMGQMYLPVNNNWFRYIRSCQDQYNSLNLEL
EKHLTGLASDACHYAVNEKYKTDKWLCDLDWTTRPYKLLTKPRKGWVAKEKPDLKVKSYL
LPLDYNTEELKFLGKSIRKERKKLDLIEKLNETANRLPLVKPHMPGAPKWYSELCVPEKD
QNWKPGATLLSTLTRVTPRLLRLMWQGCPLYHVKDYGWGYLCPDQTAPPVEKKVEDEDLL
KEVDQESWNKQEVQSNHTPAENIEGLPDGYTFHRLPHAEGAGKNVGSPLSRDFISHVESG
LLSSYNPLDALRCLEINKITSYWRSSQKRVLNQIVVEVANDKRRDCNNTPNEFNNKDMAY
SAIVPQAIVCGAVSRRAVERVWLTASNPQLDRIGSELKAMVQAPPGFCFVGADVDSQELW
IASLLGDASSAKEHGCTALSWMTLRGNKKEGTDLHSTTAASIGISRDQAKVFNYGRMYGA
GKKSSLRSLMQFNKDLSREECIAKVNKLYGITKGEVQYKLSRDALWIIQKTGIELNSEAM
TSGYASFDDVTLIQNVANEASNYTARINRNDLVCGRRWHGGIESHMFNKVEEISNSKTPK
TPALDCKISRALEPGKVNGNFVTTRMNWVVQSSAVDYLHLLLVSMRWLIEKYKLDCRFVL
SIHDEVRYMSSYEHRHKTALALQISNLLTRSMFAYKLGMDDLPLGVAFFSCIEVDSVVRK
SADDDCVTPSNSEGLSARYGIPLGESYDVNEILKATNNGQFH
NT seq 3369 nt   +upstreamnt  +downstreamnt
atgatatcgaaatataaaacgttgtggaacttacgtccttacaataggagtatttggaaa
aacaattcaatgctaaaatacaggaatatttcatcttctgaggcaaaagttaaaaaagat
acgacttcaagatataacaaatttggaattcagatgttaccagaaaaattacacaagcaa
atttttaaagaaacgagaataaaagacgagaatccgaaacaaattcagcaaagcattgaa
catttggataagtttggtctgtggggtaaggagcaggaatctctgcctgattatgacgtc
acattgccgaaattatatggtaacaatgtgaatgaacattttgaaaatgttgcttctgag
caaagtaggccttatagggaagctttgaacaaattagtaaaaaatgagcttcctaatatg
ccgggccttgatgactgggtggatcaaccagggtggacaagatacacttattttaatggt
aaattaatgactgaacctgtggaatacccggctggtgatgctgttgtgttcgattgtgaa
gttttggtaagtgcaagtgaagcaccgataatggcagtggctgcttctacagatgcttgg
ttttcatggagtagctcatgcttaaaacaggaggatcctagaatggaggcgaacctagaa
tccatgatacccattgagtcagcggtacacgttaaagaaaattgtacagaatgcaaactt
gtaattgggcacaatgtgggctatgatagggcgagaattcaagagcaatattattctcaa
ttgaccaatgtaaggttcttggatacaatgagtatgcatataggtgtcagcggttttaat
tttcagcaacgggttttgtcacaagccacaaggtctgaggttggggagaattttgtttct
ggatcttctgcgtttgataatgattgggtgtcaatggggaccactaatgcattgaaagaa
gttcataagttttactgtgggaaaacattagataaggaattaagggatgttttcgtgacc
ggtaacattaaagatgtgagagagaattttcaagagctaatgtggtattgtgctaaagat
gtacaagctacgtataacgtgctggcaaagttgactcctttgttttttgatcgttttccg
caccctgttacttttgcaggaatgcttgaaatgggccagatgtatttacctgtgaataac
aactggttcaggtacatacggtcatgtcaggaccaatacaacagcttaaacttggaactg
gaaaaacatttgacaggtttagcaagcgacgcatgtcactatgctgtcaatgagaaatat
aaaacagataaatggctgtgtgacctggactggaccacccgtccgtacaaattgttaact
aaaccacgaaaaggttgggtggcaaaggaaaaacctgatttaaaagtaaaatcctatctt
ttaccgttggactacaatactgaggaattaaagttcttgggtaaatctattagaaaggaa
cgaaaaaagcttgatttgattgaaaaactgaatgaaactgcaaacagattgccgctggtt
aaacctcatatgccaggtgctcctaagtggtacagtgagctgtgtgtgcctgagaaagat
caaaactggaagccaggagctacattgctttctaccctcactagagtgactcccagactt
ctacgtttgatgtggcagggatgtcctctttaccatgtgaaggattatggatgggggtat
ttgtgtccggatcaaactgctcctccagttgagaaaaaggttgaagatgaggatttattg
aaagaagtcgatcaagaatcatggaacaaacaggaggtgcaaagcaaccatacgcctgcg
gaaaacatcgaaggacttccagatggttacacatttcatagacttccccatgcagaaggt
gctgggaaaaatgttgggagtccgctgtctagggattttatatcgcatgttgaaagtgga
ttactgagctcttataacccattagatgccctgagatgtttggaaatcaacaaaataaca
tcttactggcgatcgtcgcaaaaacgagttttgaatcaaattgtagtggaagttgctaac
gataaacgaagagattgtaataatacaccaaatgagtttaacaataaagatatggcctac
agtgctatcgttcctcaagctatcgtgtgtggtgctgtttctcgtagggcggtggaacgc
gtatggcttactgctagtaacccgcagttggatcgtattggtagtgagttaaaagcaatg
gtacaagcgccgcctgggttttgttttgtcggtgccgacgttgactcgcaggagttatgg
attgcctcgttgctcggcgatgcgtcttctgcgaaagaacatggatgcacagcgctctct
tggatgacgctacgcggtaataaaaaggaaggtaccgacctacacagcactacagcggcg
tcaatcgggatatctcgggatcaggcgaaggttttcaattacggtcgtatgtatggtgct
ggaaagaaatcatcgcttcgaagtttaatgcagtttaataaggatctatcaagggaagaa
tgcattgctaaagtgaataagttgtacggtataacgaaaggtgaggtacagtataagcta
agccgtgatgcgctatggattattcagaaaaccggcattgaattaaactctgaagcgatg
acgagcggttacgcgtcatttgatgacgtcacgcttattcagaatgttgcgaacgaagcg
tcgaactatacagccagaataaaccggaatgatctggtttgtggtaggcgttggcacggc
ggaatagagtcccatatgttcaacaaagtagaagaaatatcgaacagcaagactccaaaa
acgcctgcacttgactgcaaaatcagccgcgcgcttgagccgggcaaagtgaacggaaat
ttcgtaactactcgcatgaactgggtcgttcaaagctcggctgttgattatttgcaccta
ctgctcgtatcaatgcggtggttgattgaaaaatacaaactagactgcagattcgtgtta
agcatacatgatgaggtccgttatatgtccagttatgaacatcgccacaaaactgcgctt
gccctgcaaatttcgaaccttttaacgcgttctatgttcgcctacaagctgggtatggac
gacttgcctttgggagttgcattttttagctgcatagaagtggatagtgtggttcgaaaa
agcgccgacgatgattgcgtaacaccctctaactctgagggtttatcagcaagatacgga
ataccactgggcgaatcttatgacgttaatgaaatattaaaagccacaaataacggccaa
tttcattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (63)   
   KEGG ORTHOLOGY (1)   
   RefGene (58)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (75)   

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