KEGG   Ciona intestinalis (yellow sea squirt): 100182679
Entry
100182679         CDS       T01056                                 
Name
(RefSeq) transcriptional regulator ATRX isoform X3
  KO
K10779  transcriptional regulator ATRX
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cin03000]
    100182679
   03036 Chromosome and associated proteins [BR:cin03036]
    100182679
Transcription factors [BR:cin03000]
 Eukaryotic type
  Zinc finger
   Cys4 GATA-factors
    100182679
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100182679
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C ResIII BRICHOS
Other DBs
NCBI-GeneID: 100182679
NCBI-ProteinID: XP_002119349
Position
2:1896529..1917881
AA seq 1357 aa
MVRNKPKPSKTCIESDEETSDVVPPESEDDQSSDGGNNKELSSSLEDSDDENHKDETPNT
RKRISKRKKQEADNEDVNDGDMSVDEKSTSLKLVLRKRKASTPLDESSDPDDEDSSSDDS
SAATSDEDQASQKSKRRKSRKNSRREAPKRKSRSKSGEKKTRKKKDKNTGRKKIKKIFGG
DQLNEETKDAEKREEERRKRLEMRGDDKIVEVGLDDSFNIVETVTKRLVLQKEPLVEVHP
SITVHLKPHQVEGVQFMWDNLIESTKLAEEGTGGGCILAHCMGLGKTLQTITTIHTILRS
ENLSIKTVLVVAPLNTLLNWMSEFDRWAPDDEPLITYNLGAYATRKERIKVLDKWKKTGG
VMVLGYDMFRLLASGTRIRYKAWRESFASALLDPGPDIVVCDEGHKLKNSESNISQVMSK
LKTRRRVVLTGTPLQNNLVEYQCMVNFVKPNLLGSLKEFRNRFVNPISNGQHLDSTDRDV
RLMKKRSHVLHNMLQGFVQRKDYTSLAQYLCGKYEYIIKVRLSPVQVSLYRHYLDTMTNR
GNNPHAVQQGSRDTGLFSDYQNLMRIWTHPRVLQLHTIRRDEQINRMICDSEEEEEAVSS
GDEEWTADRRNKDKPTEKQEDEKKPPIQNGGMISLRESDADDDEVKSNVTRKSKRMKGSS
DEEEHTATSSSEDEFKSDSEEEEEVEVKSRKKHRPKNSGRYRLRGGNSDSSDNDPVMQLN
KSMESTEENEWYSSIVGKDVADDQNAGGKLAVLFEILRLAHECDDKILVFSQSLLSLDLI
EEMLALSTVKVLSQLEDGKISTEIDYRKWYKNLDYFRMDGSSLGKSRQRWINEFNDETDR
RARLFLISTKAGSLGVNLVAANRVVIFDASWNPSHDIQSIFRVYRFGQAKCCYIYRLIAQ
GTMEEKIYDRQVTKQSLSFRVVDEQQINRHFTAHDLQELYTFNPSPTPAESERPTHALPK
DPLLAELLTGECTRDKIVSYHQHDSLLDHQEAEELTEEERKAAWEEYENEKKGLHRFNPP
PQQQRTAFTVANQMTNQITPLNMLSQLQPDPISTIQQDNLLSEAVLSSLRLPLTPEMSKE
QRNQAQSVVTLMLKATRVMQQAAARLEFLKPVDHEKTMSNLKALPMYRHMKDDSLRMIAI
ELMIRQQQQRSNAEKEFKTSKMQITWLESRYRKIIQDAVNLNGMIALAKAAANGPNSVIN
LTLDDDAEMKTKASDLARSSFQSLLTQNKEIAPRPAASKNGSAKVTSTISALFSASSKPV
KELSISEKEAPKSLKPTTIDLTDDNDKETRDTKPVVESLDTTKASAEVAKKAPPPKRVNE
NGRKKAAYESEEDSESDEDWETQYSRNAKNRSRRTRS
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggtgaggaataaaccgaaaccttcaaagacatgtattgaaagtgatgaagagacaagt
gatgtggttcctcctgaatccgaagatgatcagagttcggatggagggaataataaagaa
ttgagttcttcattggaggatagtgatgatgagaatcataaggatgaaactcctaatacc
agaaaaagaatttctaaacggaaaaaacaagaagcagataatgaagatgttaatgatggc
gatatgtctgttgatgaaaaatcaacatctttaaaacttgtgctgaggaagaggaaagct
tccactcctctggatgaaagttctgatccagatgatgaggattcctccagtgacgattct
tctgctgcaacatcagacgaagatcaagcttcacagaaatctaaaaggaggaaaagtaga
aaaaatagtagaagagaagcaccaaagaggaaatcgcgctcaaaatctggtgagaaaaaa
actagaaagaagaaagacaaaaacacgggcagaaaaaaaattaaaaagatatttggtgga
gatcaactgaacgaagaaacaaaagatgcagagaagagagaagaagagcgaaggaagagg
ttggaaatgagaggagatgataaaatcgtggaggttggtttggatgattcattcaacata
gtggaaactgttacaaaacgccttgttctgcagaaggaaccacttgtagaggttcatcca
tctatcactgtgcatttaaaaccccaccaagtggaaggagtgcagttcatgtgggataac
ttgatcgagagcacaaagctggctgaggaaggcactggtggtggatgtatcttagcacat
tgtatgggacttgggaagacacttcagaccatcacaaccatacataccatcttacgaagt
gaaaatctttccattaaaactgtgttagttgttgctccactaaatacactgcttaactgg
atgtctgagtttgatagatgggctcctgatgatgaaccattaattacatacaacctcggt
gcatacgcgactcgtaaagagaggatcaaagttctcgacaagtggaagaagactggagga
gtgatggtgctcggatatgacatgttccgcctccttgcatccggaacaaggatcagatac
aaagcttggagggagagctttgcgagtgctcttcttgatccaggtcctgatattgtagtg
tgtgatgaaggacacaaactcaagaactctgaatcgaacatttctcaggttatgagcaaa
cttaagacacgtagaagagtggtgcttactgggactccactgcaaaacaacctcgttgaa
taccaatgcatggtgaactttgtgaagccaaacctgcttgggtcactgaaagaattccga
aatcgtttcgtgaatcctatttctaatggtcagcacctggattcaacggacagggacgtt
cgtctcatgaaaaagcgttcacatgtgcttcataatatgttacaaggttttgtacagagg
aaagattacacctcccttgcccagtacttgtgtggtaaatatgaatatatcattaaagtt
cgtctcagtcctgtgcaagtgtctttataccgtcactaccttgatacaatgaccaacaga
ggcaacaacccacatgctgtccagcaaggttcaagagatactgggttattctctgattac
caaaacctgatgcgaatatggacacatccacgtgtgttgcagttgcacaccattagaagg
gatgagcagataaatcgaatgatctgtgattcagaggaagaggaggaagctgtgagtagt
ggggatgaggagtggaccgctgataggagaaacaaagacaaacctacggaaaaacaggaa
gatgaaaaaaaacccccaatacaaaatggtgggatgatttccttacgtgaatcagacgca
gatgatgatgaagtaaaatcaaatgttacaaggaagtccaagaggatgaagggaagctca
gatgaggaggaacacaccgcaacatccagctctgaggatgagtttaaaagtgactcggaa
gaagaggaagaggtggaggttaaatcacggaagaagcacagaccaaagaactcaggaaga
tacagattaagaggagggaatagtgatagtagtgataatgatccagtgatgcagttgaac
aaatcaatggaatcaacggaggagaatgaatggtactcctccattgtggggaaggatgtt
gctgatgatcagaatgcgggaggaaagcttgctgtcctctttgaaattcttcgtcttgct
catgaatgtgatgataaaatccttgtattcagtcaaagtcttctctcgctggacttgatc
gaggaaatgcttgctctgtcaaccgtgaaggttctcagccaattagaagacgggaaaatc
tcgacggagattgactataggaagtggtataaaaacttggattatttccgtatggacggt
tcatcgctgggaaaatcgcgacaacgttggataaatgagttcaacgatgaaacggacaga
agggcaaggttatttcttatatcgacgaaagctggttcgttgggcgtgaatctggtagct
gcgaaccgtgtcgttattttcgatgcatcgtggaatccttcgcatgatattcagtcaatt
ttccgcgtttatcgtttcggtcaggccaaatgctgctatatttaccggctcattgcacag
ggaaccatggaagaaaaaatctacgaccgacaggtcaccaaacagtcattgtcattccgg
gtagtggacgagcaacagatcaaccgacatttcactgcccatgatttacaggaattgtac
actttcaacccgtcacctactccagccgaaagcgagagaccaacacacgctttgcctaag
gaccccttgctcgctgagttgttgactggagaatgcactcgtgacaagattgttagttac
catcaacacgactcgcttctggatcatcaggaggcggaggagctcactgaggaggagagg
aaggcggcgtgggaggagtatgagaatgagaagaagggtctccaccgttttaacccacca
ccccaacaacaacgaaccgcttttactgtggcaaatcaaatgaccaaccagattaccccc
ttgaatatgctcagtcaactacagccagatcctatctccacaatacaacaagacaatcta
ctgagtgaagctgttctttcctcgctcaggttgcctttaactcctgaaatgagtaaagag
caacgtaaccaggcacagtcagtggttactcttatgttaaaggcgactcgtgttatgcag
caagccgccgctcgcctcgagtttttgaaacccgtcgaccatgaaaaaacgatgtccaac
cttaaagcattgcccatgtatcggcacatgaaggacgacagcttgcggatgattgcaatc
gagctgatgatccgccagcagcagcagagatcgaacgcggagaaagaatttaaaacaagc
aaaatgcaaatcacttggttggaaagcaggtatcgtaagatcattcaagatgcagtgaat
ctcaacggaatgatcgctcttgccaaagccgcagccaacgggccgaactcagtcataaac
ttaactctggatgacgacgctgaaatgaaaacaaaagcttcagatttagctcgctcttca
tttcaatcactgttgacacaaaataaggaaatcgctccaagacctgctgcatctaaaaac
ggtagtgcaaaagtgacttctactatttcggctctcttcagcgcgtcgtctaagccagtg
aaggaactgagcatttcagaaaaagaagcacccaaaagtttaaaaccaacaacaatagac
cttactgatgacaacgataaggaaacccgagatacgaaacctgttgtggaatcacttgat
acaacaaaagcgagtgctgaggtagcgaagaaggcaccgccaccgaagcgtgtaaacgag
aatggcagaaaaaaagcagcatatgagagtgaagaagattctgagagcgatgaagattgg
gaaacgcagtattctaggaacgcgaagaatcgaagtagaagaactaggtcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (143)   
   KEGG ORTHOLOGY (1)   
   RefGene (139)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (159)   

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